Click here to switch to the map view.

The map label for this gene is ygbK [C]

Identifier: 108812903

GI number: 108812903

Start: 3087818

End: 3089122

Strand: Reverse

Name: ygbK [C]

Synonym: YPN_2743

Alternate gene names: 108812903

Gene position: 3089122-3087818 (Counterclockwise)

Preceding gene: 108812904

Following gene: 108812902

Centisome position: 68.12

GC content: 51.26

Gene sequence:

>1305_bases
ATGTCTATTCAACTTGGCGTGATTGCAGATGACTTTACCGGGGCGACTGACATTGCAAGTTTTATGTCAGACAGCGGCTG
GAAAGTGGTGCAGTTTATTGAGGTTCCCACGTCAAATAATCTGTGCCCTCCTAATACCGATGCTGTCGTGATTGCGTTGA
AGAGCCGCTCAATTCCCGCCGCTGAGGCTATTGAACAATCATTGGCCTGCCTACAGTGGCTAAAAGAGTGCGCACAAGCT
CGGCAAATCTATTTCAAATATTGTTCCACGTTTGATTCAACGCCCGCAGGCAATATCGGTCAGGTCAGCGATGCCTTGAT
GTCTGCCGCGGGGGTGCAACAGTTAGTTCACTGTCCTGCATTGCCGCAGAATAAGCGCACTGTGGTTCATGCCCATCTTT
TCGTCAATGGCGTGTTGCTGAATCAATCAGGGATGGAAAATCACCCGCTCAACCCGATGCGTGATGCTGATCTACGGCGG
GTACTGGCGCCACAAATTCATGGCGCGGTGGGTTCATTGAATCTCGACGCTATTCAACAGGGTACATTGGCTATTCATCA
GCGTCTGGTTGCGCTATCAGCACAGGGCTGCAACCACGTGATTGCTGATACGCTCACCCCAGCTGATTTGGATCAGCTGG
CACTGGCGTTAGCCCAGCAACCATTACTTGCGGGCGGTTCGGGTTTAGGGGGGGCGTTGGCGAAACGGTTTCCTTCTATT
TTTATTTCAGGTGCGGCTTCTACGTTAGATGCGGCTTCTACGTCAGGGGCGACGAAATTTGCGTTTCCGATTAAGCGGAA
AACCGTGGTGCTGTCAGGCAGTTGTTCAGCCATGACTCAGCAGCAAGTTAGCACTTACTGTCAACAGGCGGCACATTTTG
CGCTGGATGTTGGGCGTTGTCTTGAGGTGAATTCAGGTTATATCAATGATATTGCTGATTGGGTGATGGCACATAGCTGC
GAGGCGCTGGCGCCATTGGTGTACGCCACTCAGCCGTCGGATATCATTCGTGAAATCCAACAACAATACGGGGAGCAGCA
AGCCAGTCTGGCCGTGGAAGCCGCGTTTGCTGGTTTGGCTAACGAATTATTAGCCCGTGGTGTCAATACGTTCATCGTGG
CAGGTGGTGAAACATCCGGTACGGTGGTGAAACAACTTGGCGTTAATATGTTGGAAATTGGCCAATCAATCGCACCTGGG
GTTCCGTGGGTACGTGACCCTCAGCGTGGTCTGATGCTGGCACTCAAGTCCGGTAATTTTGGTAATGAACACTTTTTTGT
GGCAGCACAGGAGTATACAGAGTGA

Upstream 100 bases:

>100_bases
TAAATTCATTATTTTAAAATTTGTGATAACAGTCATCTCAATGTGAAGCCCAAAGCTTAACAATAGTGTCAATTCAAACG
GTTTCACAGGAGTGGCTGAG

Downstream 100 bases:

>100_bases
ACAGCCCCCCGTTTTCAGAGCCGCCACCATCTTTGGAGCCGCCACCAGCGTCAAAACTGTCACCACCTGCCAAACAAGTA
CCCTTTTCGGAGCAACAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSIQLGVIADDFTGATDIASFMSDSGWKVVQFIEVPTSNNLCPPNTDAVVIALKSRSIPAAEAIEQSLACLQWLKECAQA
RQIYFKYCSTFDSTPAGNIGQVSDALMSAAGVQQLVHCPALPQNKRTVVHAHLFVNGVLLNQSGMENHPLNPMRDADLRR
VLAPQIHGAVGSLNLDAIQQGTLAIHQRLVALSAQGCNHVIADTLTPADLDQLALALAQQPLLAGGSGLGGALAKRFPSI
FISGAASTLDAASTSGATKFAFPIKRKTVVLSGSCSAMTQQQVSTYCQQAAHFALDVGRCLEVNSGYINDIADWVMAHSC
EALAPLVYATQPSDIIREIQQQYGEQQASLAVEAAFAGLANELLARGVNTFIVAGGETSGTVVKQLGVNMLEIGQSIAPG
VPWVRDPQRGLMLALKSGNFGNEHFFVAAQEYTE

Sequences:

>Translated_434_residues
MSIQLGVIADDFTGATDIASFMSDSGWKVVQFIEVPTSNNLCPPNTDAVVIALKSRSIPAAEAIEQSLACLQWLKECAQA
RQIYFKYCSTFDSTPAGNIGQVSDALMSAAGVQQLVHCPALPQNKRTVVHAHLFVNGVLLNQSGMENHPLNPMRDADLRR
VLAPQIHGAVGSLNLDAIQQGTLAIHQRLVALSAQGCNHVIADTLTPADLDQLALALAQQPLLAGGSGLGGALAKRFPSI
FISGAASTLDAASTSGATKFAFPIKRKTVVLSGSCSAMTQQQVSTYCQQAAHFALDVGRCLEVNSGYINDIADWVMAHSC
EALAPLVYATQPSDIIREIQQQYGEQQASLAVEAAFAGLANELLARGVNTFIVAGGETSGTVVKQLGVNMLEIGQSIAPG
VPWVRDPQRGLMLALKSGNFGNEHFFVAAQEYTE
>Mature_433_residues
SIQLGVIADDFTGATDIASFMSDSGWKVVQFIEVPTSNNLCPPNTDAVVIALKSRSIPAAEAIEQSLACLQWLKECAQAR
QIYFKYCSTFDSTPAGNIGQVSDALMSAAGVQQLVHCPALPQNKRTVVHAHLFVNGVLLNQSGMENHPLNPMRDADLRRV
LAPQIHGAVGSLNLDAIQQGTLAIHQRLVALSAQGCNHVIADTLTPADLDQLALALAQQPLLAGGSGLGGALAKRFPSIF
ISGAASTLDAASTSGATKFAFPIKRKTVVLSGSCSAMTQQQVSTYCQQAAHFALDVGRCLEVNSGYINDIADWVMAHSCE
ALAPLVYATQPSDIIREIQQQYGEQQASLAVEAAFAGLANELLARGVNTFIVAGGETSGTVVKQLGVNMLEIGQSIAPGV
PWVRDPQRGLMLALKSGNFGNEHFFVAAQEYTE

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=399, Percent_Identity=46.6165413533835, Blast_Score=322, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 45958; Mature: 45827

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQLGVIADDFTGATDIASFMSDSGWKVVQFIEVPTSNNLCPPNTDAVVIALKSRSIPA
CEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCH
AEAIEQSLACLQWLKECAQARQIYFKYCSTFDSTPAGNIGQVSDALMSAAGVQQLVHCPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
LPQNKRTVVHAHLFVNGVLLNQSGMENHPLNPMRDADLRRVLAPQIHGAVGSLNLDAIQQ
CCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
GTLAIHQRLVALSAQGCNHVIADTLTPADLDQLALALAQQPLLAGGSGLGGALAKRFPSI
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHH
FISGAASTLDAASTSGATKFAFPIKRKTVVLSGSCSAMTQQQVSTYCQQAAHFALDVGRC
EEECCCHHHHHHCCCCCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LEVNSGYINDIADWVMAHSCEALAPLVYATQPSDIIREIQQQYGEQQASLAVEAAFAGLA
EECCCCCHHHHHHHHHHHCHHHHHCEEEECCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
NELLARGVNTFIVAGGETSGTVVKQLGVNMLEIGQSIAPGVPWVRDPQRGLMLALKSGNF
HHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHCHHHCCCCCCCCCCCCCEEEEEECCCC
GNEHFFVAAQEYTE
CCCEEEEEECCCCC
>Mature Secondary Structure 
SIQLGVIADDFTGATDIASFMSDSGWKVVQFIEVPTSNNLCPPNTDAVVIALKSRSIPA
EEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCH
AEAIEQSLACLQWLKECAQARQIYFKYCSTFDSTPAGNIGQVSDALMSAAGVQQLVHCPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
LPQNKRTVVHAHLFVNGVLLNQSGMENHPLNPMRDADLRRVLAPQIHGAVGSLNLDAIQQ
CCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
GTLAIHQRLVALSAQGCNHVIADTLTPADLDQLALALAQQPLLAGGSGLGGALAKRFPSI
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHH
FISGAASTLDAASTSGATKFAFPIKRKTVVLSGSCSAMTQQQVSTYCQQAAHFALDVGRC
EEECCCHHHHHHCCCCCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LEVNSGYINDIADWVMAHSCEALAPLVYATQPSDIIREIQQQYGEQQASLAVEAAFAGLA
EECCCCCHHHHHHHHHHHCHHHHHCEEEECCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
NELLARGVNTFIVAGGETSGTVVKQLGVNMLEIGQSIAPGVPWVRDPQRGLMLALKSGNF
HHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHCHHHCCCCCCCCCCCCCEEEEEECCCC
GNEHFFVAAQEYTE
CCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]