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The map label for this gene is ygbL [H]

Identifier: 108812902

GI number: 108812902

Start: 3087192

End: 3087821

Strand: Reverse

Name: ygbL [H]

Synonym: YPN_2742

Alternate gene names: 108812902

Gene position: 3087821-3087192 (Counterclockwise)

Preceding gene: 108812903

Following gene: 108812901

Centisome position: 68.09

GC content: 53.81

Gene sequence:

>630_bases
GTGAACAGCCCCCCGTTTTCAGAGCCGCCACCATCTTTGGAGCCGCCACCAGCGTCAAAACTGTCACCACCTGCCAAACA
AGTACCCTTTTCGGAGCAACAAGTGCGTGATGATTTGGTGAACTACGCCCGCTCATTATTCCAACGGGGGTTGAGCAGTG
GGGGGGCCGGCAATATTAGCGTCAAGCTGCCTGACGGTAGCTTTCTGGTCACTCCGACCAATTCCTGCCTGGGTGAATTG
GATAGCCAAACACTGAGTAAACTCGATGCCGAGGGGAACCACATCAGCGGTGACAAACCGTCGAAAGAGGTGCCGATGCA
TTTGGCAATGTACCGTGCCAGATCCACGTGCGGGGCGGTGGTTCATTTGCACTCACCGTATCTGACCGCCTTGTCATGTC
TCACAAATATTGATCATACGAATTGTTTGCCCCCCATTACACCTTACTATGTGATGCGCATCGGGCGTCTTCCTTTGTTG
TCTTATATGAAACCCGGCGATCCGGCCATTGCCACCGCCCTTGCCGATACCGCACGCGATCACAATGCCGTTTTGCTGGC
GAACCATGGCCCGGTTGTCAGTGGTTCAACGCTGAAGAACTTGAAGATACGGCACGGCTCTATTTTCTGA

Upstream 100 bases:

>100_bases
TTCCGTGGGTACGTGACCCTCAGCGTGGTCTGATGCTGGCACTCAAGTCCGGTAATTTTGGTAATGAACACTTTTTTGTG
GCAGCACAGGAGTATACAGA

Downstream 100 bases:

>100_bases
TAAAGCCTTATGATTACAGTCAATTAACAACCTCATCCATTGATGAGTTGGCTCAATCGTACCGCAACAAAATAGGATAA
TGATGATGATCCCTGAACAG

Product: putative aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MNSPPFSEPPPSLEPPPASKLSPPAKQVPFSEQQVRDDLVNYARSLFQRGLSSGGAGNISVKLPDGSFLVTPTNSCLGEL
DSQTLSKLDAEGNHISGDKPSKEVPMHLAMYRARSTCGAVVHLHSPYLTALSCLTNIDHTNCLPPITPYYVMRIGRLPLL
SYMKPGDPAIATALADTARDHNAVLLANHGPVVSGSTLKNLKIRHGSIF

Sequences:

>Translated_209_residues
MNSPPFSEPPPSLEPPPASKLSPPAKQVPFSEQQVRDDLVNYARSLFQRGLSSGGAGNISVKLPDGSFLVTPTNSCLGEL
DSQTLSKLDAEGNHISGDKPSKEVPMHLAMYRARSTCGAVVHLHSPYLTALSCLTNIDHTNCLPPITPYYVMRIGRLPLL
SYMKPGDPAIATALADTARDHNAVLLANHGPVVSGSTLKNLKIRHGSIF
>Mature_209_residues
MNSPPFSEPPPSLEPPPASKLSPPAKQVPFSEQQVRDDLVNYARSLFQRGLSSGGAGNISVKLPDGSFLVTPTNSCLGEL
DSQTLSKLDAEGNHISGDKPSKEVPMHLAMYRARSTCGAVVHLHSPYLTALSCLTNIDHTNCLPPITPYYVMRIGRLPLL
SYMKPGDPAIATALADTARDHNAVLLANHGPVVSGSTLKNLKIRHGSIF

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789094, Length=168, Percent_Identity=57.1428571428571, Blast_Score=201, Evalue=2e-53,
Organism=Escherichia coli, GI1789164, Length=171, Percent_Identity=30.4093567251462, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: NA

Molecular weight: Translated: 22374; Mature: 22374

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPPFSEPPPSLEPPPASKLSPPAKQVPFSEQQVRDDLVNYARSLFQRGLSSGGAGNIS
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VKLPDGSFLVTPTNSCLGELDSQTLSKLDAEGNHISGDKPSKEVPMHLAMYRARSTCGAV
EEECCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE
VHLHSPYLTALSCLTNIDHTNCLPPITPYYVMRIGRLPLLSYMKPGDPAIATALADTARD
EEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCC
HNAVLLANHGPVVSGSTLKNLKIRHGSIF
CCEEEEECCCCEECCCCHHCEEECCCCCC
>Mature Secondary Structure
MNSPPFSEPPPSLEPPPASKLSPPAKQVPFSEQQVRDDLVNYARSLFQRGLSSGGAGNIS
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VKLPDGSFLVTPTNSCLGELDSQTLSKLDAEGNHISGDKPSKEVPMHLAMYRARSTCGAV
EEECCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE
VHLHSPYLTALSCLTNIDHTNCLPPITPYYVMRIGRLPLLSYMKPGDPAIATALADTARD
EEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCC
HNAVLLANHGPVVSGSTLKNLKIRHGSIF
CCEEEEECCCCEECCCCHHCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10986240; 9278503 [H]