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The map label for this gene is ycaD [C]

Identifier: 108812761

GI number: 108812761

Start: 2930897

End: 2931460

Strand: Reverse

Name: ycaD [C]

Synonym: YPN_2600

Alternate gene names: 108812761

Gene position: 2931460-2930897 (Counterclockwise)

Preceding gene: 108812762

Following gene: 108812758

Centisome position: 64.65

GC content: 48.58

Gene sequence:

>564_bases
ATGTCCGCATATTCTCGCCCCGTGCTACTCCTGCTTTGTGGGCTTTTGCTGTTCACGATCTCTATCGCGGTTTTAAATAC
ACTGGTTCCCTTATGGTTATCACATCAACAGTTGCCGACTTGGCAAGTGGGGATGGTGAGCTCATCTTATTTCACCGGTA
ATCTGGTAGGAACGTTGATTGCAGGCCGCTTTATTCAGCAACTCGGTTTTAATCGCAGTTATCATTGCTCCTGTATATTG
TTTGCACTGGCAACTTGTGGGCTGATGCTAACGGTTGATTTTTGGAGCTGGTTGGGTTGGCGCTTTTTGGCGGGCATTGC
CTGCGCGCTGATTTGGGTCATTGTCGAAAGTGCTTTATTACGCAGTGGTACCTTAACCAACCGCGGACAACTACTGGCGG
CCTACATGATGGTTTACTATTTAGGGACCGTCATCGGGCAATTATTATTGGGTATAGTCTCCACACAACTGCTCAGTGTT
ATTCCTTGGGTGGGGGCGCTGGTGATTACGGCAATGCTGCCGCTACTATTTGCCCAGTTCTCACATCATGTCAACGACGG
ATGA

Upstream 100 bases:

>100_bases
ATGACATATTGTGCTATCCCTCCCCACTGGGTAATTGACTTTTTTATCGCCAGTGGCATGATGCGCTCACTTTTATTGTC
CCGACGGTTTCTGTCTTACT

Downstream 100 bases:

>100_bases
AAAGTGATCCACTTATATCTCCACCAACGGCCCAATATTGATCCACCGTTTTACTCAGGATTAGCTTCTGCTATAACCCC
GGCCTTTCGTTTCTGTCTGA

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLIAGRFIQQLGFNRSYHCSCIL
FALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALLRSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSV
IPWVGALVITAMLPLLFAQFSHHVNDG

Sequences:

>Translated_187_residues
MSAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLIAGRFIQQLGFNRSYHCSCIL
FALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALLRSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSV
IPWVGALVITAMLPLLFAQFSHHVNDG
>Mature_186_residues
SAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLIAGRFIQQLGFNRSYHCSCILF
ALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALLRSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSVI
PWVGALVITAMLPLLFAQFSHHVNDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=179, Percent_Identity=63.6871508379888, Blast_Score=220, Evalue=5e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 20541; Mature: 20410

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHH
AGRFIQQLGFNRSYHCSCILFALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSVIPWVGALVITAMLPLLFAQF
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHHVNDG
HHHCCCC
>Mature Secondary Structure 
SAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHH
AGRFIQQLGFNRSYHCSCILFALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSVIPWVGALVITAMLPLLFAQF
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHHVNDG
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]