| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812674
Identifier: 108812674
GI number: 108812674
Start: 2825209
End: 2826747
Strand: Reverse
Name: 108812674
Synonym: YPN_2513
Alternate gene names: NA
Gene position: 2826747-2825209 (Counterclockwise)
Preceding gene: 108812675
Following gene: 108812673
Centisome position: 62.34
GC content: 55.3
Gene sequence:
>1539_bases ATGTCTGTACAGGAAAACCGTGCGCAGGGTACTGCGACGACCGTATTAAAGAATAGCCCTGCGGCACAAGGGGTTTACGC CGCCTTGTTTGAAAAAATCAACCTGAGCCCGGTCTCCTCACTGGCCGGTATCGAGGCGTTCCAGAACAACGATGCGCTGG CGGAAGCCACCACCGATGAGCGCGTTACCGCCGCCGTCAGTGTCTTTTTAGACCTGCTGAAGCAGTCGGCGAAGAAAGTA GAAAAACTGGATAAAACCCTGCTGGACGGCCATATTGCCGCACTGGATGACCAAATCAGCCGCCAGTTGGACGCGGTAAT GCACCACCCCGATTTCCAGCGGGTGGAATCGACCTGGCGTGGTGTGAAGTCGCTGATCGATCAGACCGATTTCCGCCAGA ACGTGCGCATCGAGCTGCTGGATATCAGTAAAGATCATCTGGTGCAGGATTTTGAAGATGCCCCGGAAATCTCACAAAGC GGTTTATACGCCCAGACCTATATTCAGGAATACGACACCCCCGGCGGCGAGCCGATTGCCGCGGCTATCTCCAACTACGA GTTCGACCGTAGCCCGCAAGATATCGCGTTATTGCGCAATATCTCCAAGGTCGCGGCGGCAGCCCATATGCCGTTTATCG GTTCCGTTGGCCCCGAGTTCTTTGGTAAAGAGAACATGGAAGACGTGGCAGCCATCAAAGATATCGCCAACTACTTTGAC CGTGCTGAATACATCAAGTGGAAAGCCTTCCGCGACTCGGATGATTCCCGCTATATCGGCCTGACCATGCCGCGCGTGCT GGGGCGTTTGCCTTACGGCCCGGACACGGTGCCGGTACGCAGCTTCAACTACGTTGAGCAGGTGAAAGGGCCGGATCATG ATCGCTACTTGTGGACCAATGCCTCATTTGCCTTTGCTGCTAACATGGTGAAAAGCTTCATTAAAAATGGCTGGTGTGTG CAGATCCGGGGCCCGCAGGCCGGTGGTGCGGTCACCAACTTACCGATCCACCTGTACGATCTGGGTACCGGTAATCAGGT CAAAATTCCGTCAGAGGTGATGATCCCGGAAACCCGCGAGTTCGAGTTTGCCAATCTGGGCTTTATCCCGCTGTCGTACT ACAAAAACCGCGATTACTCGTGCTTCTTCTCGGCCAACTCGGCGCAGAAACCGGCGCTGTATGACACCGCGGATGCCACG GCCAACAGCCGCATCAACGCCCGTTTGCCGTATATCTTCCTGCTGTCGCGCATTGCCCATTATCTGAAACTGATCCAGCG CGAGAACATCGGCACCACCAAAGATCGCCGTCTGCTGGAGCTGAACAACTGGGTGCGCGGGCTGGTGACGGAAATGACTG ATCCGGGTGATGATTTGCAGGCGTCCCATCCCCTGCGTGATGCCAAAGTGACGGTCGAAGATATCGAAGACAACCCCGGC TTCTTCCGCGTCAAGCTGTATGCGGTGCCGCATTTCCAGGTGGAAGGGATGGACGTCAATCTGTCATTGGTTTCCCAAAT GCCAAAGGCTAAGGCATAA
Upstream 100 bases:
>100_bases GAGCGATGAACTGCGCGCTGAACTGGCGGCCCTGGCGCCAAAAGAGGGTTAATCCCGGGATTGGCTGCTTGTCATTAGAA AGAAGAAAAGGAACATGCTG
Downstream 100 bases:
>100_bases ACGGCGACACGATGAAAATTGAACGCCCTCTGTGGGCTCGCGGGATCCTGGTGTCTCCGCAACAATTTCAACAACAGGCT TCCTGGGAGGCATGGACCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 512; Mature: 511
Protein sequence:
>512_residues MSVQENRAQGTATTVLKNSPAAQGVYAALFEKINLSPVSSLAGIEAFQNNDALAEATTDERVTAAVSVFLDLLKQSAKKV EKLDKTLLDGHIAALDDQISRQLDAVMHHPDFQRVESTWRGVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEISQS GLYAQTYIQEYDTPGGEPIAAAISNYEFDRSPQDIALLRNISKVAAAAHMPFIGSVGPEFFGKENMEDVAAIKDIANYFD RAEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHDRYLWTNASFAFAANMVKSFIKNGWCV QIRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTADAT ANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELNNWVRGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPG FFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA
Sequences:
>Translated_512_residues MSVQENRAQGTATTVLKNSPAAQGVYAALFEKINLSPVSSLAGIEAFQNNDALAEATTDERVTAAVSVFLDLLKQSAKKV EKLDKTLLDGHIAALDDQISRQLDAVMHHPDFQRVESTWRGVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEISQS GLYAQTYIQEYDTPGGEPIAAAISNYEFDRSPQDIALLRNISKVAAAAHMPFIGSVGPEFFGKENMEDVAAIKDIANYFD RAEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHDRYLWTNASFAFAANMVKSFIKNGWCV QIRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTADAT ANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELNNWVRGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPG FFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA >Mature_511_residues SVQENRAQGTATTVLKNSPAAQGVYAALFEKINLSPVSSLAGIEAFQNNDALAEATTDERVTAAVSVFLDLLKQSAKKVE KLDKTLLDGHIAALDDQISRQLDAVMHHPDFQRVESTWRGVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEISQSG LYAQTYIQEYDTPGGEPIAAAISNYEFDRSPQDIALLRNISKVAAAAHMPFIGSVGPEFFGKENMEDVAAIKDIANYFDR AEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHDRYLWTNASFAFAANMVKSFIKNGWCVQ IRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTADATA NSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELNNWVRGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPGF FRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA
Specific function: Unknown
COG id: COG3517
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57288; Mature: 57157
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVQENRAQGTATTVLKNSPAAQGVYAALFEKINLSPVSSLAGIEAFQNNDALAEATTDE CCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECCCHH RVTAAVSVFLDLLKQSAKKVEKLDKTLLDGHIAALDDQISRQLDAVMHHPDFQRVESTWR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEISQSGLYAQTYIQEYDTPGGEPIA HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCCHHH AAISNYEFDRSPQDIALLRNISKVAAAAHMPFIGSVGPEFFGKENMEDVAAIKDIANYFD HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHH RAEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHDRYLWTN HHHHEEEEEECCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEC ASFAFAANMVKSFIKNGWCVQIRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETRE CHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCEEEEECCCCCEEECCCCCCCCCCCC FEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAH CCCCCCCCEEEHHHCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHH YLKLIQRENIGTTKDRRLLELNNWVRGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCC FFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA EEEEEEEEECCEEEECCEECHHHHHCCCCCCC >Mature Secondary Structure SVQENRAQGTATTVLKNSPAAQGVYAALFEKINLSPVSSLAGIEAFQNNDALAEATTDE CCCCCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECCCHH RVTAAVSVFLDLLKQSAKKVEKLDKTLLDGHIAALDDQISRQLDAVMHHPDFQRVESTWR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEISQSGLYAQTYIQEYDTPGGEPIA HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCCHHH AAISNYEFDRSPQDIALLRNISKVAAAAHMPFIGSVGPEFFGKENMEDVAAIKDIANYFD HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHH RAEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHDRYLWTN HHHHEEEEEECCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEC ASFAFAANMVKSFIKNGWCVQIRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETRE CHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCEEEEECCCCCEEECCCCCCCCCCCC FEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAH CCCCCCCCEEEHHHCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHH YLKLIQRENIGTTKDRRLLELNNWVRGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCC FFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA EEEEEEEEECCEEEECCEECHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA