Click here to switch to the map view.

The map label for this gene is 108812673

Identifier: 108812673

GI number: 108812673

Start: 2823845

End: 2825197

Strand: Reverse

Name: 108812673

Synonym: YPN_2512

Alternate gene names: NA

Gene position: 2825197-2823845 (Counterclockwise)

Preceding gene: 108812674

Following gene: 108812672

Centisome position: 62.3

GC content: 59.79

Gene sequence:

>1353_bases
ATGAAAATTGAACGCCCTCTGTGGGCTCGCGGGATCCTGGTGTCTCCGCAACAATTTCAACAACAGGCTTCCTGGGAGGC
ATGGACCAATGAATGCATTGCGCAAATGGCCGTGATGCATCCCTGGGGCGTGCTTCAGGCCACTTTTGAATTGGATGCAT
TGGCACAGGGCCGCCTGAAAGCGGCGCGTTTGCATGTGCGTTTTCAGGACGGTGTGCTGGTGGATACCGAGTGTGCTGAT
GTGCTGCCGCCCACGCTGACGCTGGCAGCCAGTCTGCCCGCCGAGGCCAGCGACGCCACGGTGATGCTGGCGATACCACA
ACTGTATGCCAATGGCGGTAACTGCCTGCAGCCGGATGAGCGGGGCGAACGCCCGGTACGCTATCGTCAGGCCTGGCGCG
ATGTCCAAAATCAGTTCGGCGATGACAAAAAGCAGGTCGCGGTGATGTACCACCAACTGACCCTGCGGCTGGACACTCAG
GAAAACGGCGATTATCAGGTCTGCCCGGTGGCGCGTTTGCTGCGGGATGCGCAAGGTCGCTGGACACTGGATCCGGGCTT
TATTCCGCCGATGCTGAGCCTGCAGGCCAGTGCCTGGTGTGGCGAACAGCTTGAGTTATTGATGGTGCAACTGCGGGCGC
GTTTGCAGCGTCTGATGGGGATGCGCCGGGAGAGCAATGCACGGATGGCCGATTTTGCTGTTGCGGATGTGTCGCTGTTC
TGGCTGCTCAATGCCCTTAACAGTGCCGAACCGGTATTGGGGAATTTTCAGCGCTATCCGCAGGTTCATCCAGAGCGCCT
GTATCAGGAACTGGCCAGGCTGGCGGGCAGCCTGCTGACGTTCTCCCTTGAGCACGAAGTGACGGCGATCCCGGTTTATC
AGCATGAACAACTGACCCGCGTCTTTCCCCCGTTGTTTGCCCTGCTGAATATTCTGCTGGAAGCCAGCCTCCCTTCACGG
GTAGTGGCGATTGAGCTGGTTCATGAACCGCGTATCAATCAGTGGCGCGCGACCCTGCGTGACCCTCGTCTGCGCGAAGG
GGCCGATTTCTACCTGTCGGTCCGTTCCTCGTTGCCCGCGGCCCAATTGCAGACTCAGTTCCCGCAGTTGTGTAAAGCCG
GTGCGCCGGATGAGGTCGGTAACGTGGTGAATGTTGCGCTGAGTGGGATCCCACTGCGCCCGCTGAGCCATGTCCCAGCC
GCCATCCCCTTGCGGCTGGAAAACCAGTACTTCTCCCTTGATCTCAGCCACCCTGCGGCGACGCAGATGATGGAGACGGG
GGCCTGTGTGTTCTATGTACCCGGTACGCTGGGTGAGATCCAACTGGAGCTGTTTGCGGTGCTACGCGCATGA

Upstream 100 bases:

>100_bases
TCAAGCTGTATGCGGTGCCGCATTTCCAGGTGGAAGGGATGGACGTCAATCTGTCATTGGTTTCCCAAATGCCAAAGGCT
AAGGCATAAACGGCGACACG

Downstream 100 bases:

>100_bases
ATCCTCACCTAACCGAACACCCCCCAGTCGGGGATATTGACGCCCTGTTGCAGGACACCTGGCTACAGGTGATCAGCCTG
CGTCAAGGGGTAACCTGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Conserved Protein; Protein ImpJ/VasE; Type VI Secretion System Core Protein; Replication/Virulence Associated Protein; T6ss M; Type VI Secretion System Protein EvpM; Protein ImpJ; Type VI Secretion Protein VasE; Type VI Secretion System Protein ImpJ; Temperature-Dependent Protein Secretion ImpJ

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MKIERPLWARGILVSPQQFQQQASWEAWTNECIAQMAVMHPWGVLQATFELDALAQGRLKAARLHVRFQDGVLVDTECAD
VLPPTLTLAASLPAEASDATVMLAIPQLYANGGNCLQPDERGERPVRYRQAWRDVQNQFGDDKKQVAVMYHQLTLRLDTQ
ENGDYQVCPVARLLRDAQGRWTLDPGFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLF
WLLNALNSAEPVLGNFQRYPQVHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTRVFPPLFALLNILLEASLPSR
VVAIELVHEPRINQWRATLRDPRLREGADFYLSVRSSLPAAQLQTQFPQLCKAGAPDEVGNVVNVALSGIPLRPLSHVPA
AIPLRLENQYFSLDLSHPAATQMMETGACVFYVPGTLGEIQLELFAVLRA

Sequences:

>Translated_450_residues
MKIERPLWARGILVSPQQFQQQASWEAWTNECIAQMAVMHPWGVLQATFELDALAQGRLKAARLHVRFQDGVLVDTECAD
VLPPTLTLAASLPAEASDATVMLAIPQLYANGGNCLQPDERGERPVRYRQAWRDVQNQFGDDKKQVAVMYHQLTLRLDTQ
ENGDYQVCPVARLLRDAQGRWTLDPGFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLF
WLLNALNSAEPVLGNFQRYPQVHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTRVFPPLFALLNILLEASLPSR
VVAIELVHEPRINQWRATLRDPRLREGADFYLSVRSSLPAAQLQTQFPQLCKAGAPDEVGNVVNVALSGIPLRPLSHVPA
AIPLRLENQYFSLDLSHPAATQMMETGACVFYVPGTLGEIQLELFAVLRA
>Mature_450_residues
MKIERPLWARGILVSPQQFQQQASWEAWTNECIAQMAVMHPWGVLQATFELDALAQGRLKAARLHVRFQDGVLVDTECAD
VLPPTLTLAASLPAEASDATVMLAIPQLYANGGNCLQPDERGERPVRYRQAWRDVQNQFGDDKKQVAVMYHQLTLRLDTQ
ENGDYQVCPVARLLRDAQGRWTLDPGFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLF
WLLNALNSAEPVLGNFQRYPQVHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTRVFPPLFALLNILLEASLPSR
VVAIELVHEPRINQWRATLRDPRLREGADFYLSVRSSLPAAQLQTQFPQLCKAGAPDEVGNVVNVALSGIPLRPLSHVPA
AIPLRLENQYFSLDLSHPAATQMMETGACVFYVPGTLGEIQLELFAVLRA

Specific function: Unknown

COG id: COG3522

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50481; Mature: 50481

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIERPLWARGILVSPQQFQQQASWEAWTNECIAQMAVMHPWGVLQATFELDALAQGRLK
CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCE
AARLHVRFQDGVLVDTECADVLPPTLTLAASLPAEASDATVMLAIPQLYANGGNCLQPDE
EEEEEEEEECCEEEECCHHHHCCCHHEEHCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCC
RGERPVRYRQAWRDVQNQFGDDKKQVAVMYHQLTLRLDTQENGDYQVCPVARLLRDAQGR
CCCCCHHHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEECCCCCCEEEEHHHHHHHCCCCC
WTLDPGFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLF
EEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
WLLNALNSAEPVLGNFQRYPQVHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTR
HHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCEEEEECHHHHHHHH
VFPPLFALLNILLEASLPSRVVAIELVHEPRINQWRATLRDPRLREGADFYLSVRSSLPA
HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCH
AQLQTQFPQLCKAGAPDEVGNVVNVALSGIPLRPLSHVPAAIPLRLENQYFSLDLSHPAA
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEECCCCHH
TQMMETGACVFYVPGTLGEIQLELFAVLRA
HHHHHCCCEEEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKIERPLWARGILVSPQQFQQQASWEAWTNECIAQMAVMHPWGVLQATFELDALAQGRLK
CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCE
AARLHVRFQDGVLVDTECADVLPPTLTLAASLPAEASDATVMLAIPQLYANGGNCLQPDE
EEEEEEEEECCEEEECCHHHHCCCHHEEHCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCC
RGERPVRYRQAWRDVQNQFGDDKKQVAVMYHQLTLRLDTQENGDYQVCPVARLLRDAQGR
CCCCCHHHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEECCCCCCEEEEHHHHHHHCCCCC
WTLDPGFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLF
EEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
WLLNALNSAEPVLGNFQRYPQVHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTR
HHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCEEEEECHHHHHHHH
VFPPLFALLNILLEASLPSRVVAIELVHEPRINQWRATLRDPRLREGADFYLSVRSSLPA
HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCH
AQLQTQFPQLCKAGAPDEVGNVVNVALSGIPLRPLSHVPAAIPLRLENQYFSLDLSHPAA
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEECCCCHH
TQMMETGACVFYVPGTLGEIQLELFAVLRA
HHHHHCCCEEEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA