| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812667
Identifier: 108812667
GI number: 108812667
Start: 2813234
End: 2815465
Strand: Reverse
Name: 108812667
Synonym: YPN_2506
Alternate gene names: NA
Gene position: 2815465-2813234 (Counterclockwise)
Preceding gene: 108812668
Following gene: 108812666
Centisome position: 62.09
GC content: 43.59
Gene sequence:
>2232_bases ATGATGCATGTAGATCCTGAGCGCGGTTTTCCCCTTAACAGCCATCGCTCGTGGCACGGAGGCATACATATTCCTCATAC TGACAGCGGCGGTACGCCAGAAAAGATCCGAGCTATCGCAGATGGCACGGTGCACTCTCTCCGCCAGCCAGTCGGTGACA AAAAAGGCATTCCTCCTTATAACTACAATGGCGCTACGGATTGCGGCTATGTTTTGTTGAAACATGAAACAGAGATCGGT TCAGGTGAAAATGCCAAAGTAGTGTATTTCTCGCTTTATATGCATTTGGCCTCTATAGATGCAGCAGTAAAAACTGGCGA GAAGATTTATCGCAAAGATCCCATTGGTACCGTCGGTCAGGTTGATGGAGGCAATGCAGTCCATTTCCAGATATTTTGTG ATGACACTAATTTGACAAAATTAGTTGGCCGCACGACGCCAGAACTGGATTTGACGAAAAATGGCCGAACGGATGCGGTT TATGGCGATATGTATTTTTATCTGCCAACAGGCACCAAATTTTACAGCCACGCGCCGGCCAACAATGCCACTACAACCAC CGAAGCTGAAACCTATACCAGCACCGAACCTCTCTTTGTCAGCATGAGTTTTGATAAGGGCAAGTGCACCATGCTCACAC GTAAGAAAGGTGTGTTCTCTATTGGAAAATACAGCGAGGTCGGTGAAAAACTGGAAAACGCCGATGGTGCAGATTACGAA TACAACTTGTATGCGCAGGCTAAGAAGTTATACCCGCAAAGCCAAAGTGCAGGTTATGAGCTGTTAAGGTTTGGTCGGGC CATCAACACCGACTATGAAACATTGGTCCCTGCCGACGCACCATTGTGGCGAACCATCAGTTATCCGGGTGGCAAAGGCG TTGTGAACCTAGCCCTTCCGGCAGTGAAGAAGTTCAGTGATGGTGATTTCCCGCACTGGACTGGCTGGCAACTGATCGAT GACGACACAGACGAAAACAGCCAGTGCAATTCAGAGCAGGTACTCTGCCGTATTGGCGATGATATGCAGGGTCTGATCTG CCATTTACCACTGGAATGGGACGCATCGACGCTAGAGAAACGTCTCTCATGGCTGAAAACGACGGTGATAAATGAAAGTC TGGCCAATCAAAAAGCAAGCCATCAGGTAGATGACACAGGGAATAATGCTTCAGGGTATGCATTCGATAATATAAACCCT GACATGAGCGTGCTGAATGCGCAAAGTACTCCCTCTTTTGAACAAGCAGCAAAAGATACCGCGATGGCAGAAGCCGACTG GAATGCGCTTATCGAACATGCTAAAGCATTGTGTTTTGATGTCAGCGGTTTGCCTGCAGGGCGGGTCTGGCACTTTAACC CTATTTCGTTTATTGCACATTTTAGGAAGTGCGGGTGGGTTGAGAACTCAGTACTTAGTCTGATTCTTAGCAGTAATACA AATAAAGCTCCTTTGAGAAAATCGATCACTGAAGCAGTCGAAAAATATGGCGATAATATCAATAGAATAATGCTGAAATA CATTATGAACACTCCAATAAGGCGCGCACATTTTATTGGGCAAGGTGCAGTAGAATCTGACTATTTAATGACCATCCAAG AAGTTAGTCAAAAACAGGACATTATTAATGGCAAGCCGGTAGGCGGAGATATTGTTCAAGATTCAAAGAGAAATGAAAGA GACTTGGGACATTGGTATGGAGAAGTCCCTACAGAAATTGATGTTTACTTTTCTGGGAAAAAGTACAATAAGAAAGGTAG TTATATAGCAGGTTCATATAGTTGGAGTAATGGTAATTGTGGCGATATTGACGCCCAAAAATTCAGGGGTAGAGGATTCA AAATGCTCACTGGTCGCGCAAACTATGCTTCATATTGGGTGTATAGAGGATGGCTACAGACTAATGACTTTGATGCATAC TGGTGGGATGATTCTGAATATAAAAAAAAGAACACAAAGAAAATGAAGAAAAAACCTGCAATTATTAATTCACCACAAAA AGTAACTGAGAACGAATATAACTGCATAGATACTGGCGGATATTTCATTCGAGGAATAAAGCCAAAAACGATTCAATCAA TGGATGATGACAAAGAATATATCATGAACAAAGGTCAAGGTGAAAATGAAAACAGAGTCATCGAGCGAGTAACAAAAGCA ATCAACGGAGCAGATAAAGGACTTGAACAACGCAAATTTTTTACGAAAAAAGCCAAAGGTATAATGATATGA
Upstream 100 bases:
>100_bases TTGGCTATTCTCTTAACAGGACGTTAAAAATATGATTATCAGCCCTTTATTTTTAAAAGATAAGTCCAACTCAGAAGACG ATGCTTCCTGGGTCTCCAGA
Downstream 100 bases:
>100_bases AATCATTTACATTACTCTCTTTATTTATACTATCTCAATTTTATTCTTTAAGTGCATTATCTGATGACTCAATCTCAGTA AGAATTGATGACATTAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 743; Mature: 743
Protein sequence:
>743_residues MMHVDPERGFPLNSHRSWHGGIHIPHTDSGGTPEKIRAIADGTVHSLRQPVGDKKGIPPYNYNGATDCGYVLLKHETEIG SGENAKVVYFSLYMHLASIDAAVKTGEKIYRKDPIGTVGQVDGGNAVHFQIFCDDTNLTKLVGRTTPELDLTKNGRTDAV YGDMYFYLPTGTKFYSHAPANNATTTTEAETYTSTEPLFVSMSFDKGKCTMLTRKKGVFSIGKYSEVGEKLENADGADYE YNLYAQAKKLYPQSQSAGYELLRFGRAINTDYETLVPADAPLWRTISYPGGKGVVNLALPAVKKFSDGDFPHWTGWQLID DDTDENSQCNSEQVLCRIGDDMQGLICHLPLEWDASTLEKRLSWLKTTVINESLANQKASHQVDDTGNNASGYAFDNINP DMSVLNAQSTPSFEQAAKDTAMAEADWNALIEHAKALCFDVSGLPAGRVWHFNPISFIAHFRKCGWVENSVLSLILSSNT NKAPLRKSITEAVEKYGDNINRIMLKYIMNTPIRRAHFIGQGAVESDYLMTIQEVSQKQDIINGKPVGGDIVQDSKRNER DLGHWYGEVPTEIDVYFSGKKYNKKGSYIAGSYSWSNGNCGDIDAQKFRGRGFKMLTGRANYASYWVYRGWLQTNDFDAY WWDDSEYKKKNTKKMKKKPAIINSPQKVTENEYNCIDTGGYFIRGIKPKTIQSMDDDKEYIMNKGQGENENRVIERVTKA INGADKGLEQRKFFTKKAKGIMI
Sequences:
>Translated_743_residues MMHVDPERGFPLNSHRSWHGGIHIPHTDSGGTPEKIRAIADGTVHSLRQPVGDKKGIPPYNYNGATDCGYVLLKHETEIG SGENAKVVYFSLYMHLASIDAAVKTGEKIYRKDPIGTVGQVDGGNAVHFQIFCDDTNLTKLVGRTTPELDLTKNGRTDAV YGDMYFYLPTGTKFYSHAPANNATTTTEAETYTSTEPLFVSMSFDKGKCTMLTRKKGVFSIGKYSEVGEKLENADGADYE YNLYAQAKKLYPQSQSAGYELLRFGRAINTDYETLVPADAPLWRTISYPGGKGVVNLALPAVKKFSDGDFPHWTGWQLID DDTDENSQCNSEQVLCRIGDDMQGLICHLPLEWDASTLEKRLSWLKTTVINESLANQKASHQVDDTGNNASGYAFDNINP DMSVLNAQSTPSFEQAAKDTAMAEADWNALIEHAKALCFDVSGLPAGRVWHFNPISFIAHFRKCGWVENSVLSLILSSNT NKAPLRKSITEAVEKYGDNINRIMLKYIMNTPIRRAHFIGQGAVESDYLMTIQEVSQKQDIINGKPVGGDIVQDSKRNER DLGHWYGEVPTEIDVYFSGKKYNKKGSYIAGSYSWSNGNCGDIDAQKFRGRGFKMLTGRANYASYWVYRGWLQTNDFDAY WWDDSEYKKKNTKKMKKKPAIINSPQKVTENEYNCIDTGGYFIRGIKPKTIQSMDDDKEYIMNKGQGENENRVIERVTKA INGADKGLEQRKFFTKKAKGIMI >Mature_743_residues MMHVDPERGFPLNSHRSWHGGIHIPHTDSGGTPEKIRAIADGTVHSLRQPVGDKKGIPPYNYNGATDCGYVLLKHETEIG SGENAKVVYFSLYMHLASIDAAVKTGEKIYRKDPIGTVGQVDGGNAVHFQIFCDDTNLTKLVGRTTPELDLTKNGRTDAV YGDMYFYLPTGTKFYSHAPANNATTTTEAETYTSTEPLFVSMSFDKGKCTMLTRKKGVFSIGKYSEVGEKLENADGADYE YNLYAQAKKLYPQSQSAGYELLRFGRAINTDYETLVPADAPLWRTISYPGGKGVVNLALPAVKKFSDGDFPHWTGWQLID DDTDENSQCNSEQVLCRIGDDMQGLICHLPLEWDASTLEKRLSWLKTTVINESLANQKASHQVDDTGNNASGYAFDNINP DMSVLNAQSTPSFEQAAKDTAMAEADWNALIEHAKALCFDVSGLPAGRVWHFNPISFIAHFRKCGWVENSVLSLILSSNT NKAPLRKSITEAVEKYGDNINRIMLKYIMNTPIRRAHFIGQGAVESDYLMTIQEVSQKQDIINGKPVGGDIVQDSKRNER DLGHWYGEVPTEIDVYFSGKKYNKKGSYIAGSYSWSNGNCGDIDAQKFRGRGFKMLTGRANYASYWVYRGWLQTNDFDAY WWDDSEYKKKNTKKMKKKPAIINSPQKVTENEYNCIDTGGYFIRGIKPKTIQSMDDDKEYIMNKGQGENENRVIERVTKA INGADKGLEQRKFFTKKAKGIMI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83191; Mature: 83191
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMHVDPERGFPLNSHRSWHGGIHIPHTDSGGTPEKIRAIADGTVHSLRQPVGDKKGIPPY CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHCHHHHHHHCCCCCCCCCCCC NYNGATDCGYVLLKHETEIGSGENAKVVYFSLYMHLASIDAAVKTGEKIYRKDPIGTVGQ CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHCCCCCCCCC VDGGNAVHFQIFCDDTNLTKLVGRTTPELDLTKNGRTDAVYGDMYFYLPTGTKFYSHAPA CCCCCEEEEEEEECCCCHHHHHCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEECCCCC NNATTTTEAETYTSTEPLFVSMSFDKGKCTMLTRKKGVFSIGKYSEVGEKLENADGADYE CCCCCCCCCCEECCCCCEEEEEECCCCCEEEEEECCCCEECCCHHHHHHHHHCCCCCCEE YNLYAQAKKLYPQSQSAGYELLRFGRAINTDYETLVPADAPLWRTISYPGGKGVVNLALP EEEEHHHHHCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCCEEEEEHH AVKKFSDGDFPHWTGWQLIDDDTDENSQCNSEQVLCRIGDDMQGLICHLPLEWDASTLEK HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHHHH RLSWLKTTVINESLANQKASHQVDDTGNNASGYAFDNINPDMSVLNAQSTPSFEQAAKDT HHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCEEECCCCCCHHEEECCCCCCHHHHHHHH AMAEADWNALIEHAKALCFDVSGLPAGRVWHFNPISFIAHFRKCGWVENSVLSLILSSNT HHHHHHHHHHHHHHHHHEEECCCCCCCCEEEECHHHHHHHHHHCCCHHHHHHHEEECCCC NKAPLRKSITEAVEKYGDNINRIMLKYIMNTPIRRAHFIGQGAVESDYLMTIQEVSQKQD CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH IINGKPVGGDIVQDSKRNERDLGHWYGEVPTEIDVYFSGKKYNKKGSYIAGSYSWSNGNC CCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCEECCCCCEEEEEEECCCCCC GDIDAQKFRGRGFKMLTGRANYASYWVYRGWLQTNDFDAYWWDDSEYKKKNTKKMKKKPA CCCCHHHHCCCCEEEEECCCCCEEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCC IINSPQKVTENEYNCIDTGGYFIRGIKPKTIQSMDDDKEYIMNKGQGENENRVIERVTKA CCCCCHHHCCCCCCEEECCCEEEECCCCHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHH INGADKGLEQRKFFTKKAKGIMI HCHHHCCHHHHHHHHHHCCCCCC >Mature Secondary Structure MMHVDPERGFPLNSHRSWHGGIHIPHTDSGGTPEKIRAIADGTVHSLRQPVGDKKGIPPY CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHCHHHHHHHCCCCCCCCCCCC NYNGATDCGYVLLKHETEIGSGENAKVVYFSLYMHLASIDAAVKTGEKIYRKDPIGTVGQ CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHCCCCCCCCC VDGGNAVHFQIFCDDTNLTKLVGRTTPELDLTKNGRTDAVYGDMYFYLPTGTKFYSHAPA CCCCCEEEEEEEECCCCHHHHHCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEECCCCC NNATTTTEAETYTSTEPLFVSMSFDKGKCTMLTRKKGVFSIGKYSEVGEKLENADGADYE CCCCCCCCCCEECCCCCEEEEEECCCCCEEEEEECCCCEECCCHHHHHHHHHCCCCCCEE YNLYAQAKKLYPQSQSAGYELLRFGRAINTDYETLVPADAPLWRTISYPGGKGVVNLALP EEEEHHHHHCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCCEEEEEHH AVKKFSDGDFPHWTGWQLIDDDTDENSQCNSEQVLCRIGDDMQGLICHLPLEWDASTLEK HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHHHH RLSWLKTTVINESLANQKASHQVDDTGNNASGYAFDNINPDMSVLNAQSTPSFEQAAKDT HHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCEEECCCCCCHHEEECCCCCCHHHHHHHH AMAEADWNALIEHAKALCFDVSGLPAGRVWHFNPISFIAHFRKCGWVENSVLSLILSSNT HHHHHHHHHHHHHHHHHEEECCCCCCCCEEEECHHHHHHHHHHCCCHHHHHHHEEECCCC NKAPLRKSITEAVEKYGDNINRIMLKYIMNTPIRRAHFIGQGAVESDYLMTIQEVSQKQD CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH IINGKPVGGDIVQDSKRNERDLGHWYGEVPTEIDVYFSGKKYNKKGSYIAGSYSWSNGNC CCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCEECCCCCEEEEEEECCCCCC GDIDAQKFRGRGFKMLTGRANYASYWVYRGWLQTNDFDAYWWDDSEYKKKNTKKMKKKPA CCCCHHHHCCCCEEEEECCCCCEEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCC IINSPQKVTENEYNCIDTGGYFIRGIKPKTIQSMDDDKEYIMNKGQGENENRVIERVTKA CCCCCHHHCCCCCCEEECCCEEEECCCCHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHH INGADKGLEQRKFFTKKAKGIMI HCHHHCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA