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The map label for this gene is ydiU [C]

Identifier: 108812029

GI number: 108812029

Start: 2112377

End: 2113099

Strand: Reverse

Name: ydiU [C]

Synonym: YPN_1867

Alternate gene names: 108812029

Gene position: 2113099-2112377 (Counterclockwise)

Preceding gene: 108812030

Following gene: 108812028

Centisome position: 46.6

GC content: 52.01

Gene sequence:

>723_bases
ATGAAACCCAGAATGGAATACGCCCCTGAATTCGATAACAGCTATGCGCGGCAGTTGAGTGGTTTTTACACCCGCTTGCA
ACCTACGCCATTAAAAGGTGCCCGCTTGTTGTATCACAGCAAACCTCTGGCGCAAGAGTTAGGGCTGGATGCTCATTGGT
TCACTGAACCAAAGACTGCTGTGTGGGCGGGGGAAGCACTGTTACCCGGAATGGAGCCGCTAGCGCAGGTGTATAGCGGC
CATCAATTTGGCATGTGGGCAGGGCAGCTTGGGGATGGCCGTGGGATCTTGTTAGGAGAACAGCGGCTTAATGATGGCCG
CTATATGGATTGGCATTTAAAAGGCGCTGGATTAACACCTTATTCCCGTATGGGGGATGGCCGGGCTGTCTTGCGTTCTG
TGATACGTGAGTTTTTGGCCTCCGAAGCATTACACCATTTAGGTATTCCAACCAGCCGTGCTCTGACAATTGTGACTAGC
GATCATCCAATCTACCGTGAGCAAACTGAACGAGGCGCGATGCTACTAAGGGTGGCGGAAAGCCATATTCGCTTCGGTCA
TTTCGAGCATTTCTACTATCGGCAGCAACCTAAGCAAGTTCAACAATTAGCGGATTATGTTATTGCCCGCCACTGGCCGC
AGTGGGTGGGGCACCAAGAATGCTACCGACTGTGGTTTACGGATGTGGTAGAGCGAACCGCGCGTTTAATGGCCCACTGG
TAA

Upstream 100 bases:

>100_bases
AACCGAGTTACAGCAAGCCTGCCATTGGCTGGTAGAAGTATTACGCTAATCTTTCAATTACCGTGGTTATTGGCCGCGCA
CAGCACTCGTGGACATAGAG

Downstream 100 bases:

>100_bases
ACCGTCGGGTTTGCTCATGGTGTGATGAATACCGATAATATGTCAATTCTTGGCATTACTATGGATTATGGCCCATTTGG
TTTTCTCGATGACTATGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKPRMEYAPEFDNSYARQLSGFYTRLQPTPLKGARLLYHSKPLAQELGLDAHWFTEPKTAVWAGEALLPGMEPLAQVYSG
HQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEALHHLGIPTSRALTIVTS
DHPIYREQTERGAMLLRVAESHIRFGHFEHFYYRQQPKQVQQLADYVIARHWPQWVGHQECYRLWFTDVVERTARLMAHW

Sequences:

>Translated_240_residues
MKPRMEYAPEFDNSYARQLSGFYTRLQPTPLKGARLLYHSKPLAQELGLDAHWFTEPKTAVWAGEALLPGMEPLAQVYSG
HQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEALHHLGIPTSRALTIVTS
DHPIYREQTERGAMLLRVAESHIRFGHFEHFYYRQQPKQVQQLADYVIARHWPQWVGHQECYRLWFTDVVERTARLMAHW
>Mature_240_residues
MKPRMEYAPEFDNSYARQLSGFYTRLQPTPLKGARLLYHSKPLAQELGLDAHWFTEPKTAVWAGEALLPGMEPLAQVYSG
HQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEALHHLGIPTSRALTIVTS
DHPIYREQTERGAMLLRVAESHIRFGHFEHFYYRQQPKQVQQLADYVIARHWPQWVGHQECYRLWFTDVVERTARLMAHW

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=244, Percent_Identity=43.4426229508197, Blast_Score=171, Evalue=6e-43,
Organism=Escherichia coli, GI1787999, Length=223, Percent_Identity=67.2645739910314, Blast_Score=310, Evalue=5e-86,
Organism=Saccharomyces cerevisiae, GI6325034, Length=139, Percent_Identity=48.9208633093525, Blast_Score=122, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1840_YERPY (B1JJ37)

Other databases:

- EMBL:   CP000950
- RefSeq:   YP_001720584.1
- GeneID:   6089298
- GenomeReviews:   CP000950_GR
- KEGG:   ypy:YPK_1840
- HOGENOM:   HBG683993
- OMA:   FGSYNPR
- ProtClustDB:   PRK00029
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 27772; Mature: 27772

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRMEYAPEFDNSYARQLSGFYTRLQPTPLKGARLLYHSKPLAQELGLDAHWFTEPKTA
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHCCCCEECCCCCHH
VWAGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTP
EEECCHHCCCHHHHHHHHCCCCCCCEECCCCCCCEEEEEHHHCCCCCEEEEEECCCCCCC
YSRMGDGRAVLRSVIREFLASEALHHLGIPTSRALTIVTSDHPIYREQTERGAMLLRVAE
HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
SHIRFGHFEHFYYRQQPKQVQQLADYVIARHWPQWVGHQECYRLWFTDVVERTARLMAHW
HHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPRMEYAPEFDNSYARQLSGFYTRLQPTPLKGARLLYHSKPLAQELGLDAHWFTEPKTA
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHCCCCEECCCCCHH
VWAGEALLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQRLNDGRYMDWHLKGAGLTP
EEECCHHCCCHHHHHHHHCCCCCCCEECCCCCCCEEEEEHHHCCCCCEEEEEECCCCCCC
YSRMGDGRAVLRSVIREFLASEALHHLGIPTSRALTIVTSDHPIYREQTERGAMLLRVAE
HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
SHIRFGHFEHFYYRQQPKQVQQLADYVIARHWPQWVGHQECYRLWFTDVVERTARLMAHW
HHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA