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The map label for this gene is ydiU [C]

Identifier: 108812028

GI number: 108812028

Start: 2111636

End: 2112355

Strand: Reverse

Name: ydiU [C]

Synonym: YPN_1866

Alternate gene names: 108812028

Gene position: 2112355-2111636 (Counterclockwise)

Preceding gene: 108812029

Following gene: 108812025

Centisome position: 46.58

GC content: 45.69

Gene sequence:

>720_bases
GTGATGAATACCGATAATATGTCAATTCTTGGCATTACTATGGATTATGGCCCATTTGGTTTTCTCGATGACTATGTGCC
TGGATATATCTGTAACCACTCCGACCATCAAGGGCGTTATGCTTATGATAATCAGCCTGCCGTAGCGTTATGGAATTTGC
ATCGATTGGGGCACGCGTTGTCAGGTTTAATGTCTGCTGACCAATTGCAGTTGGCGCTAGAGGCTTATGAACCGGCACTT
ATGGTTGCTTATGGTGAACAGATGCGAGCCAAGTTAGGTTTTCTTGAGCGTGACAGCCAAGATAACGATTTGCTGACAGG
TTTGTTGAGTTTGATGATCAAAGAAGGCCGGGATTATACCCGGACTTTCCGCTTATTGAGCGAAGTTGAAGTACACTCTG
CACAATCGCCATTGCGGGATGACTTTATCGATAGAGCCGCTTTTGACGACTGGTACCGCCGTTATCGTTCACGGTTGCAG
CAAGAATCCATTGATGATGATCAGCGCCAGCAATCGATGAAAGCGGCTAATCCTAAATACATATTACGTAATTATTTGGC
TCAGCAGGCGATTACTCAGGCAGAAAAAGATGATATTCAGCCACTTCAGCGGTTGCACCAGGCATTACAGCAACCGTTTA
CTGATCAACCTGAATTTGATGATTTAGCGGCGTTACCCCCAGATTGGGGAAAACACCTCGAGATCTCTTGTTCCAGCTGA

Upstream 100 bases:

>100_bases
GGTGGGGCACCAAGAATGCTACCGACTGTGGTTTACGGATGTGGTAGAGCGAACCGCGCGTTTAATGGCCCACTGGTAAA
CCGTCGGGTTTGCTCATGGT

Downstream 100 bases:

>100_bases
CTTTTTATTCCATTTGGCACTTGTAATGTGCGCCATTACAGAGAATAGATCGCTGTTTTTTCGGAAAAAATAGGGATAGA
AAAAGTTAACCCGACAACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MMNTDNMSILGITMDYGPFGFLDDYVPGYICNHSDHQGRYAYDNQPAVALWNLHRLGHALSGLMSADQLQLALEAYEPAL
MVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYTRTFRLLSEVEVHSAQSPLRDDFIDRAAFDDWYRRYRSRLQ
QESIDDDQRQQSMKAANPKYILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDWGKHLEISCSS

Sequences:

>Translated_239_residues
MMNTDNMSILGITMDYGPFGFLDDYVPGYICNHSDHQGRYAYDNQPAVALWNLHRLGHALSGLMSADQLQLALEAYEPAL
MVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYTRTFRLLSEVEVHSAQSPLRDDFIDRAAFDDWYRRYRSRLQ
QESIDDDQRQQSMKAANPKYILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDWGKHLEISCSS
>Mature_239_residues
MMNTDNMSILGITMDYGPFGFLDDYVPGYICNHSDHQGRYAYDNQPAVALWNLHRLGHALSGLMSADQLQLALEAYEPAL
MVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYTRTFRLLSEVEVHSAQSPLRDDFIDRAAFDDWYRRYRSRLQ
QESIDDDQRQQSMKAANPKYILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDWGKHLEISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=147, Percent_Identity=44.2176870748299, Blast_Score=118, Evalue=5e-27,
Organism=Escherichia coli, GI1787999, Length=239, Percent_Identity=62.7615062761506, Blast_Score=323, Evalue=9e-90,
Organism=Saccharomyces cerevisiae, GI6325034, Length=73, Percent_Identity=43.8356164383562, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 27510; Mature: 27510

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNTDNMSILGITMDYGPFGFLDDYVPGYICNHSDHQGRYAYDNQPAVALWNLHRLGHAL
CCCCCCEEEEEEEECCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
SGLMSADQLQLALEAYEPALMVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYT
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
RTFRLLSEVEVHSAQSPLRDDFIDRAAFDDWYRRYRSRLQQESIDDDQRQQSMKAANPKY
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
ILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDWGKHLEISCSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MMNTDNMSILGITMDYGPFGFLDDYVPGYICNHSDHQGRYAYDNQPAVALWNLHRLGHAL
CCCCCCEEEEEEEECCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
SGLMSADQLQLALEAYEPALMVAYGEQMRAKLGFLERDSQDNDLLTGLLSLMIKEGRDYT
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
RTFRLLSEVEVHSAQSPLRDDFIDRAAFDDWYRRYRSRLQQESIDDDQRQQSMKAANPKY
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
ILRNYLAQQAITQAEKDDIQPLQRLHQALQQPFTDQPEFDDLAALPPDWGKHLEISCSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA