Click here to switch to the map view.

The map label for this gene is rbsB [H]

Identifier: 108811907

GI number: 108811907

Start: 1966045

End: 1966395

Strand: Reverse

Name: rbsB [H]

Synonym: YPN_1745

Alternate gene names: 108811907

Gene position: 1966395-1966045 (Counterclockwise)

Preceding gene: 108811911

Following gene: 108811906

Centisome position: 43.36

GC content: 47.86

Gene sequence:

>351_bases
ATGCAGTCAATGCTTCAGGCAAATCCGGACATAAAAGGGGTTATCAGCGGGAATGATGAAATGGCGCTCGGGGCCATTGC
CGCGTTGAAGGAAGCCGGCAAAATCGACCAAGTGAAAGTAGGGGCGTTTGATGGTTCACCAGATGCGGTGGATGCCGTGA
AAGCCGGTACGTTGGCTTATACTGTGTTGCAACCGGTCGCTGTTTTTTCAGCAAAAGCCATTGAACAGGCGGATAATTTC
CTCAAAACCGGTAAAACGGGCGCTCGGGGTGAAAAACAACTTTTTGACTGTATGTTGATCACAAAAGCGAATGTCGACAA
ATATACATCACCGTTTGTGATGTCAGAGTAA

Upstream 100 bases:

>100_bases
CCGGGCCAACGGCTACAGTAGCGTACTGTCTCAGTATCCAGACCTCAAACGGGTCGGTAAAGAAGTGGCTAACTGGGATC
GTACTCAGGGATACAACAAA

Downstream 100 bases:

>100_bases
GTTATTATCTCTCACCGCTGATGAGCCAAACCAGTGAGTCAGCGGTGTCATTTAATCATTATTGAGACTGAGGAGGCGGG
TTATCACCAGCGCCAAAGGT

Product: ribose-binding periplasmic protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MQSMLQANPDIKGVISGNDEMALGAIAALKEAGKIDQVKVGAFDGSPDAVDAVKAGTLAYTVLQPVAVFSAKAIEQADNF
LKTGKTGARGEKQLFDCMLITKANVDKYTSPFVMSE

Sequences:

>Translated_116_residues
MQSMLQANPDIKGVISGNDEMALGAIAALKEAGKIDQVKVGAFDGSPDAVDAVKAGTLAYTVLQPVAVFSAKAIEQADNF
LKTGKTGARGEKQLFDCMLITKANVDKYTSPFVMSE
>Mature_116_residues
MQSMLQANPDIKGVISGNDEMALGAIAALKEAGKIDQVKVGAFDGSPDAVDAVKAGTLAYTVLQPVAVFSAKAIEQADNF
LKTGKTGARGEKQLFDCMLITKANVDKYTSPFVMSE

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=89, Percent_Identity=49.438202247191, Blast_Score=76, Evalue=7e-16,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 12184; Mature: 12184

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSMLQANPDIKGVISGNDEMALGAIAALKEAGKIDQVKVGAFDGSPDAVDAVKAGTLAY
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
TVLQPVAVFSAKAIEQADNFLKTGKTGARGEKQLFDCMLITKANVDKYTSPFVMSE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEECCCCCCCCCCEEECC
>Mature Secondary Structure
MQSMLQANPDIKGVISGNDEMALGAIAALKEAGKIDQVKVGAFDGSPDAVDAVKAGTLAY
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
TVLQPVAVFSAKAIEQADNFLKTGKTGARGEKQLFDCMLITKANVDKYTSPFVMSE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]