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The map label for this gene is araA [H]

Identifier: 108811884

GI number: 108811884

Start: 1938944

End: 1940446

Strand: Reverse

Name: araA [H]

Synonym: YPN_1722

Alternate gene names: 108811884

Gene position: 1940446-1938944 (Counterclockwise)

Preceding gene: 108811885

Following gene: 108811878

Centisome position: 42.79

GC content: 49.5

Gene sequence:

>1503_bases
ATGGACGTATTCAAGCAATCAGAAGTGTGGTTTGTCATTGGTAGCCAGAATCTGTATGGCCCTAAAACCCTGCAACAAGT
TATGGATAATGCACATCAGGTGGTCAATAGCCTGAACAACGAAGCGGGTTTACCCGTAAAACTGGTATTAAAACCGTTGG
TTACAACACCGGATGAAATCACCGCATTATGTCGTGAAGCTAACTACGACACGGCCTGTATCGGTATCATGACCTGGCTG
CACACCTTCTCTCCGGCCAAAATGTGGATTGGCGGCCTGAGCATTCTGAATAAACCGCTGTTACAGTTCCATACCCAGTT
TAATGCCCAAATCCCGTGGAAAACGATGGATATGGACTTTATGAACCTAAACCATACCGCACACGGTGGCCGTGAATTTG
GTTTCATTGGTGCCCGTATGCGCCAGCAACACAGTGTGATAACCGGTCACTGGCAGGATAAAGAAGCCCACCAGCGCATT
GGTCAGTGGATGCGCGTCGCCGCCGCAAAACAAGAAAGTCAACAACTGAAAGTGGCGCGCTTTGGCGATAACATGCGTGA
AGTCGCCGTAACTGAAGGGGACAAAGTCGCTGCCCAGATCCAATTTGGCTATTCCGTTAATGCTTATGGCATTGGGGATT
TAGTCGCCGTGGTCGATGCCGTCAGTAAAGGTGATATCGATACGCTGGTTGAAGAATATGAGGCCACCTATCGCTTTACC
GATGCGGTGAAACTCAATGGTGATAAGCGCGAAAACTTACTGGATGCAGCACGTATTGAGCTAGGTATGACGCGTTTTCT
GGAGCAAGGTGGTTTTAAAGCCTTCACCACTAACTTTGAAAATCTTTATGGTTTGAAGCAGTTACCTGGCCTGGCAGTCC
AGCGACTCATGCAACAGGGTTACGGTTTTGGTGGCGAAGGCGACTGGAAAACCGCCGCATTACTGCGCATCTTAAAAGTG
ATGGGAACCGGCCTGAAAGGCGGCACTTCCTTTATGGAGGATTACACTTATAACTTCCAGCCAGGTAATGACTTAGTTGT
TGGCTCACATATGCTGGAAGTCTGCCCGTCGATCGCCAAAGAAGAGAAGCCCCTGCTAGATGTGCAACACCTTGGCATTG
GAGGGAAAGCTGACCCTGCCCGTTTGATTTTCTCTACCCCCGCAGGCCCGGCGCTGAATGCCAGTTTGATCGATATGGGG
AACCGTTTCCGCTTGCTGGTTAATGTGGTTGATACCGTTGAACAACCTCATCCATTGCCAAAATTACCGGTTGCCCGGGC
TATCTGGCAAGCACAACCTTCACTGGCAACGGCTGCTGAAGCTTGGATCATCGCCGGTGGCGCACACCATACGGTATTCT
CACAAGCGGTGGGTGTCGATGAACTGCGTTTATATGCCGAAATGCACGGTATTGAATTCTTGTTGATCGACAATGACACG
ACGTTACCGGCGTTCAAAAACGAAATCCGTTGGAACGAGGTGTACTATCAGCTCAATCGCTAA

Upstream 100 bases:

>100_bases
CCAAGGTAATTCACTGATATTGACAAGCAGTCTACTTTAACGACATTCACGATAACTGAATGTTTTATATCGAGTAATCA
TTTATTAAATGGAGTGATAG

Downstream 100 bases:

>100_bases
TGTTGTTGGGTATGATTTTTAGTATTGGAAAAATCAGTATTATAAAATTCGCTATGATAGCGACACCCTCAGAGGCCTGT
TGGCTCCTGAGGGTGATGAC

Product: L-arabinose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MDVFKQSEVWFVIGSQNLYGPKTLQQVMDNAHQVVNSLNNEAGLPVKLVLKPLVTTPDEITALCREANYDTACIGIMTWL
HTFSPAKMWIGGLSILNKPLLQFHTQFNAQIPWKTMDMDFMNLNHTAHGGREFGFIGARMRQQHSVITGHWQDKEAHQRI
GQWMRVAAAKQESQQLKVARFGDNMREVAVTEGDKVAAQIQFGYSVNAYGIGDLVAVVDAVSKGDIDTLVEEYEATYRFT
DAVKLNGDKRENLLDAARIELGMTRFLEQGGFKAFTTNFENLYGLKQLPGLAVQRLMQQGYGFGGEGDWKTAALLRILKV
MGTGLKGGTSFMEDYTYNFQPGNDLVVGSHMLEVCPSIAKEEKPLLDVQHLGIGGKADPARLIFSTPAGPALNASLIDMG
NRFRLLVNVVDTVEQPHPLPKLPVARAIWQAQPSLATAAEAWIIAGGAHHTVFSQAVGVDELRLYAEMHGIEFLLIDNDT
TLPAFKNEIRWNEVYYQLNR

Sequences:

>Translated_500_residues
MDVFKQSEVWFVIGSQNLYGPKTLQQVMDNAHQVVNSLNNEAGLPVKLVLKPLVTTPDEITALCREANYDTACIGIMTWL
HTFSPAKMWIGGLSILNKPLLQFHTQFNAQIPWKTMDMDFMNLNHTAHGGREFGFIGARMRQQHSVITGHWQDKEAHQRI
GQWMRVAAAKQESQQLKVARFGDNMREVAVTEGDKVAAQIQFGYSVNAYGIGDLVAVVDAVSKGDIDTLVEEYEATYRFT
DAVKLNGDKRENLLDAARIELGMTRFLEQGGFKAFTTNFENLYGLKQLPGLAVQRLMQQGYGFGGEGDWKTAALLRILKV
MGTGLKGGTSFMEDYTYNFQPGNDLVVGSHMLEVCPSIAKEEKPLLDVQHLGIGGKADPARLIFSTPAGPALNASLIDMG
NRFRLLVNVVDTVEQPHPLPKLPVARAIWQAQPSLATAAEAWIIAGGAHHTVFSQAVGVDELRLYAEMHGIEFLLIDNDT
TLPAFKNEIRWNEVYYQLNR
>Mature_500_residues
MDVFKQSEVWFVIGSQNLYGPKTLQQVMDNAHQVVNSLNNEAGLPVKLVLKPLVTTPDEITALCREANYDTACIGIMTWL
HTFSPAKMWIGGLSILNKPLLQFHTQFNAQIPWKTMDMDFMNLNHTAHGGREFGFIGARMRQQHSVITGHWQDKEAHQRI
GQWMRVAAAKQESQQLKVARFGDNMREVAVTEGDKVAAQIQFGYSVNAYGIGDLVAVVDAVSKGDIDTLVEEYEATYRFT
DAVKLNGDKRENLLDAARIELGMTRFLEQGGFKAFTTNFENLYGLKQLPGLAVQRLMQQGYGFGGEGDWKTAALLRILKV
MGTGLKGGTSFMEDYTYNFQPGNDLVVGSHMLEVCPSIAKEEKPLLDVQHLGIGGKADPARLIFSTPAGPALNASLIDMG
NRFRLLVNVVDTVEQPHPLPKLPVARAIWQAQPSLATAAEAWIIAGGAHHTVFSQAVGVDELRLYAEMHGIEFLLIDNDT
TLPAFKNEIRWNEVYYQLNR

Specific function: Catalyzes the conversion of L-arabinose to L-ribulose [H]

COG id: COG2160

COG function: function code G; L-arabinose isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the arabinose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1786248, Length=500, Percent_Identity=73.4, Blast_Score=804, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004216
- InterPro:   IPR009015
- InterPro:   IPR003762
- ProDom:   PD018364 [H]

Pfam domain/function: PF02610 Arabinose_Isome [H]

EC number: =5.3.1.4 [H]

Molecular weight: Translated: 55608; Mature: 55608

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVFKQSEVWFVIGSQNLYGPKTLQQVMDNAHQVVNSLNNEAGLPVKLVLKPLVTTPDEI
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH
TALCREANYDTACIGIMTWLHTFSPAKMWIGGLSILNKPLLQFHTQFNAQIPWKTMDMDF
HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCE
MNLNHTAHGGREFGFIGARMRQQHSVITGHWQDKEAHQRIGQWMRVAAAKQESQQLKVAR
EECCCCCCCCCCCCHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGDNMREVAVTEGDKVAAQIQFGYSVNAYGIGDLVAVVDAVSKGDIDTLVEEYEATYRFT
HCCCCCEEEECCCCEEEEEEEECCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEEEE
DAVKLNGDKRENLLDAARIELGMTRFLEQGGFKAFTTNFENLYGLKQLPGLAVQRLMQQG
EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCHHHCCCHHHHHHHHHC
YGFGGEGDWKTAALLRILKVMGTGLKGGTSFMEDYTYNFQPGNDLVVGSHMLEVCPSIAK
CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEECHHHHHHCHHHHH
EEKPLLDVQHLGIGGKADPARLIFSTPAGPALNASLIDMGNRFRLLVNVVDTVEQPHPLP
CCCCCEEHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCC
KLPVARAIWQAQPSLATAAEAWIIAGGAHHTVFSQAVGVDELRLYAEMHGIEFLLIDNDT
CCHHHHHHHHCCCCHHHHHCEEEEECCCHHHHHHHHCCHHHHHHHHHHCCEEEEEEECCC
TLPAFKNEIRWNEVYYQLNR
CCCHHHHHCCEEEEEEEECC
>Mature Secondary Structure
MDVFKQSEVWFVIGSQNLYGPKTLQQVMDNAHQVVNSLNNEAGLPVKLVLKPLVTTPDEI
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH
TALCREANYDTACIGIMTWLHTFSPAKMWIGGLSILNKPLLQFHTQFNAQIPWKTMDMDF
HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCE
MNLNHTAHGGREFGFIGARMRQQHSVITGHWQDKEAHQRIGQWMRVAAAKQESQQLKVAR
EECCCCCCCCCCCCHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGDNMREVAVTEGDKVAAQIQFGYSVNAYGIGDLVAVVDAVSKGDIDTLVEEYEATYRFT
HCCCCCEEEECCCCEEEEEEEECCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEEEE
DAVKLNGDKRENLLDAARIELGMTRFLEQGGFKAFTTNFENLYGLKQLPGLAVQRLMQQG
EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCHHHCCCHHHHHHHHHC
YGFGGEGDWKTAALLRILKVMGTGLKGGTSFMEDYTYNFQPGNDLVVGSHMLEVCPSIAK
CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEECHHHHHHCHHHHH
EEKPLLDVQHLGIGGKADPARLIFSTPAGPALNASLIDMGNRFRLLVNVVDTVEQPHPLP
CCCCCEEHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCC
KLPVARAIWQAQPSLATAAEAWIIAGGAHHTVFSQAVGVDELRLYAEMHGIEFLLIDNDT
CCHHHHHHHHCCCCHHHHHCEEEEECCCHHHHHHHHCCHHHHHHHHHHCCEEEEEEECCC
TLPAFKNEIRWNEVYYQLNR
CCCHHHHHCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA