| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
Click here to switch to the map view.
The map label for this gene is 108811821
Identifier: 108811821
GI number: 108811821
Start: 1876980
End: 1877225
Strand: Reverse
Name: 108811821
Synonym: YPN_1659
Alternate gene names: NA
Gene position: 1877225-1876980 (Counterclockwise)
Preceding gene: 108811822
Following gene: 108811817
Centisome position: 41.4
GC content: 39.84
Gene sequence:
>246_bases ATGGAATGTCCGGTGTGCAATAATACCCAGTTAGTGATGACTGAACGCAAAAGTATTGAGATAGACTATTGTCCAAATTG CCGTGGTGTTTGGTTGGATCGCGGGAAATTAGACAAACTCATTGAAAAATCGGTAGAAAACTCACCAGCAACCTCATTCT CTGATGAGAGAGAGCATGGTAATCACGGATACTCAAAATCCAAGCACTACAGAAAAAAAGGGTTCTTATCTCGTTTTTTT GATTAG
Upstream 100 bases:
>100_bases CCACACTTACACATAATTACCTGGAATCATTGTCTAATTAAGGACAGTTTCTATATCGCACAAACTCAGGTCACGTTGAT TTAATGCGGAGATGAAAGCT
Downstream 100 bases:
>100_bases TCTTATTAAACAGCCCACGGTTGTAGACACTAGATATAATAATACGCCTAAAGCTAGGCGTATTATTATAAGTTTTTTTT GTTAATTAACCACGATAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 81; Mature: 81
Protein sequence:
>81_residues MECPVCNNTQLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEKSVENSPATSFSDEREHGNHGYSKSKHYRKKGFLSRFF D
Sequences:
>Translated_81_residues MECPVCNNTQLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEKSVENSPATSFSDEREHGNHGYSKSKHYRKKGFLSRFF D >Mature_81_residues MECPVCNNTQLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEKSVENSPATSFSDEREHGNHGYSKSKHYRKKGFLSRFF D
Specific function: Unknown
COG id: COG3809
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9459; Mature: 9459
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MECPVCNNTQLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEKSVENSPATSFSDEREHG CCCCCCCCCEEEEECCCCEEEEECCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC NHGYSKSKHYRKKGFLSRFFD CCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MECPVCNNTQLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEKSVENSPATSFSDEREHG CCCCCCCCCEEEEECCCCEEEEECCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC NHGYSKSKHYRKKGFLSRFFD CCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA