| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108811591
Identifier: 108811591
GI number: 108811591
Start: 1624731
End: 1625483
Strand: Reverse
Name: 108811591
Synonym: YPN_1428
Alternate gene names: NA
Gene position: 1625483-1624731 (Counterclockwise)
Preceding gene: 108811592
Following gene: 108811590
Centisome position: 35.85
GC content: 46.61
Gene sequence:
>753_bases ATGTCCTTACATGCGAACGCAGGGGTGGGGAGATGTCGTGGAGAAACCCTGGTGAGCAGCGCAGATATTTTTAAAAAGAT TTTAAGTATTGACACCTTATTATCATTCGATGGTGTCATCCCTTCTTTATCCGAGTTTCAGCTAAAGCTGGTCACCCTGA TTGAACAGTTTGGCCACGCGCTGCAATCCGAGGGACATAACGAAACTGAAGTTGATCGTTTATGTCATCAGATTTGTCAC TCGCTTGATAAACGTGCGGGAAGTGCAATTAAAGAGAACGGGTTGAGTTGGGAAGGCTATTCATTAGTGCATTACTTCTA CGGCTACATCGCGCCGGTCCCTAGCGAAAGCGAAAATTTAGAAGCGCTATTAAACAGTGACGATGCCACAGTCAGTCAAT TCGCACTCAAGATACTTGCCCTCTCGCAGAATTTACCGATCCACGATGAAAAATCATTGCAGCTACTGGCGCGCTATAGC CATAGATCCTTGCGCCAAAATATAATCGCCACTGACGATGATATCGACCCAGAGGAGTGGCTGGGTTCAGCGCTAAAGAG GGAAGAAACCATTGAGGCAGAACAAGTGCCTGAGGCCAATATAGTATCTGAGGCCAATATAGTACTTGAGGCCAATATAG TATCTGAGCAACGCCGCTCTTCGCGCCCTTTTTATCTGCAACTTGTCGCGCTGACGCTATTGCTCTCTACGCTCTGGTTT TGGTGCTCTCGCTATTTAGGTGATCTGTCTTAA
Upstream 100 bases:
>100_bases AGAACATGAGCAAAACGGTTACCCCCGTTGACGAAGCTACCTTTGAGTTGAAGTTGGCCTTTAATACTCAAACCCATCCG AATGCACAAACAATTAGAAT
Downstream 100 bases:
>100_bases ATGTTTAAGGTTAAATTGAATAAAACGCTCTCTCTATTATGGCTGGCTGCGGTCGGCGCCCTATTGGTGAGTGTGAATTT TAAGGGAAATGCGTTATGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MSLHANAGVGRCRGETLVSSADIFKKILSIDTLLSFDGVIPSLSEFQLKLVTLIEQFGHALQSEGHNETEVDRLCHQICH SLDKRAGSAIKENGLSWEGYSLVHYFYGYIAPVPSESENLEALLNSDDATVSQFALKILALSQNLPIHDEKSLQLLARYS HRSLRQNIIATDDDIDPEEWLGSALKREETIEAEQVPEANIVSEANIVLEANIVSEQRRSSRPFYLQLVALTLLLSTLWF WCSRYLGDLS
Sequences:
>Translated_250_residues MSLHANAGVGRCRGETLVSSADIFKKILSIDTLLSFDGVIPSLSEFQLKLVTLIEQFGHALQSEGHNETEVDRLCHQICH SLDKRAGSAIKENGLSWEGYSLVHYFYGYIAPVPSESENLEALLNSDDATVSQFALKILALSQNLPIHDEKSLQLLARYS HRSLRQNIIATDDDIDPEEWLGSALKREETIEAEQVPEANIVSEANIVLEANIVSEQRRSSRPFYLQLVALTLLLSTLWF WCSRYLGDLS >Mature_249_residues SLHANAGVGRCRGETLVSSADIFKKILSIDTLLSFDGVIPSLSEFQLKLVTLIEQFGHALQSEGHNETEVDRLCHQICHS LDKRAGSAIKENGLSWEGYSLVHYFYGYIAPVPSESENLEALLNSDDATVSQFALKILALSQNLPIHDEKSLQLLARYSH RSLRQNIIATDDDIDPEEWLGSALKREETIEAEQVPEANIVSEANIVLEANIVSEQRRSSRPFYLQLVALTLLLSTLWFW CSRYLGDLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27973; Mature: 27842
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLHANAGVGRCRGETLVSSADIFKKILSIDTLLSFDGVIPSLSEFQLKLVTLIEQFGHA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH LQSEGHNETEVDRLCHQICHSLDKRAGSAIKENGLSWEGYSLVHYFYGYIAPVPSESENL HHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHH EALLNSDDATVSQFALKILALSQNLPIHDEKSLQLLARYSHRSLRQNIIATDDDIDPEEW HHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH LGSALKREETIEAEQVPEANIVSEANIVLEANIVSEQRRSSRPFYLQLVALTLLLSTLWF HHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHH WCSRYLGDLS HHHHHHCCCC >Mature Secondary Structure SLHANAGVGRCRGETLVSSADIFKKILSIDTLLSFDGVIPSLSEFQLKLVTLIEQFGHA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH LQSEGHNETEVDRLCHQICHSLDKRAGSAIKENGLSWEGYSLVHYFYGYIAPVPSESENL HHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHH EALLNSDDATVSQFALKILALSQNLPIHDEKSLQLLARYSHRSLRQNIIATDDDIDPEEW HHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH LGSALKREETIEAEQVPEANIVSEANIVLEANIVSEQRRSSRPFYLQLVALTLLLSTLWF HHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHH WCSRYLGDLS HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA