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The map label for this gene is ypjD [H]

Identifier: 108810965

GI number: 108810965

Start: 932957

End: 933850

Strand: Reverse

Name: ypjD [H]

Synonym: YPN_0800

Alternate gene names: 108810965

Gene position: 933850-932957 (Counterclockwise)

Preceding gene: 108810967

Following gene: 162139445

Centisome position: 20.59

GC content: 45.86

Gene sequence:

>894_bases
GTGCAAACGATCTCTGCCCTCACGTCGGAGAACGGTTGGAGAGGAACGCTCTCAACGCTATACTGGCTATCTAATTCCCT
TAGCCGATGCTCATATAACGCTATGCCCGTGTTTTCCATTTTGGCTTTGCTTGCTTATTCGCTCAGCTTGGGGCTGATTA
TCCCAAGTCTGGTGCGGAAAAATAGTGCTTACCGGCGGTTAGCGCTGGTTTCTGCCGTCGTGGCACTAGTGTGCCATGCT
ATTGCCTTGAAAAATCAAATTTTTGATGTTGGCGTTGGTCAGAATCTTACGTTACTGAACATTGGTTCTATTGTTGGGCT
GATGATCTGTACGATTATGACCATTGTCGCTTCACAAGGGCGTGGCTGGTTTTTACTCCCTATTGTCTATAGCTTCGCCA
TGATCAATCTGGCGCTTGCCAGCCTGCTTCCAGGGGAGTTTATTACCCATTTGGAAGCCAGCCCAGAGATATTTATCCAC
ATCGGTCTGGCGCTTTTTGCTTATGCCACGCTTATCATCGCGGCGCTGTATGCGCTACAACTGGCTTGGCTTGATTATCA
GTTAAAACATAAGAAACTGACGTTTAATGCTGATATGCCGCCGTTAATGAGCATTGAACGAAAAATGTTCCATATCACCC
AAATTGGGGTGGTATTACTTACACTGACACTTTGTACCGGTTTGCTTTATATGGATAATCTCTTCAGTAAAGAAAATGTC
CATAAAGCGGTGTTATCGATTATGGCCTGGTTTGTCTATATCGTTTTATTGTGGGGCCATTATCATGAAGGTTGGCGTGG
GCGTAGGGTCATTTGGTTCAGTTTTGCGGGCGCCTTTCTACTTACACTGGCTTATTTTGGTAGCCGTCTGGTCCAGGAAA
TTATGGTTCGCTAG

Upstream 100 bases:

>100_bases
GTGTGCGCGACAATCGATCAGTTAAGTTCTCAAACATTGTCTCATACTCAACGTGGAAACAGGCCGCTCTGGCGACACAA
TTAGGGGATTATAACACGAA

Downstream 100 bases:

>100_bases
TGATTACCGCAACCACCTACACAAGGCCCAACGGAACTGGCTGAGGCCTCATCACGATAAGGAATACTGTGTTGGAGCAC
GTATCAACTAGCTCATTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MQTISALTSENGWRGTLSTLYWLSNSLSRCSYNAMPVFSILALLAYSLSLGLIIPSLVRKNSAYRRLALVSAVVALVCHA
IALKNQIFDVGVGQNLTLLNIGSIVGLMICTIMTIVASQGRGWFLLPIVYSFAMINLALASLLPGEFITHLEASPEIFIH
IGLALFAYATLIIAALYALQLAWLDYQLKHKKLTFNADMPPLMSIERKMFHITQIGVVLLTLTLCTGLLYMDNLFSKENV
HKAVLSIMAWFVYIVLLWGHYHEGWRGRRVIWFSFAGAFLLTLAYFGSRLVQEIMVR

Sequences:

>Translated_297_residues
MQTISALTSENGWRGTLSTLYWLSNSLSRCSYNAMPVFSILALLAYSLSLGLIIPSLVRKNSAYRRLALVSAVVALVCHA
IALKNQIFDVGVGQNLTLLNIGSIVGLMICTIMTIVASQGRGWFLLPIVYSFAMINLALASLLPGEFITHLEASPEIFIH
IGLALFAYATLIIAALYALQLAWLDYQLKHKKLTFNADMPPLMSIERKMFHITQIGVVLLTLTLCTGLLYMDNLFSKENV
HKAVLSIMAWFVYIVLLWGHYHEGWRGRRVIWFSFAGAFLLTLAYFGSRLVQEIMVR
>Mature_297_residues
MQTISALTSENGWRGTLSTLYWLSNSLSRCSYNAMPVFSILALLAYSLSLGLIIPSLVRKNSAYRRLALVSAVVALVCHA
IALKNQIFDVGVGQNLTLLNIGSIVGLMICTIMTIVASQGRGWFLLPIVYSFAMINLALASLLPGEFITHLEASPEIFIH
IGLALFAYATLIIAALYALQLAWLDYQLKHKKLTFNADMPPLMSIERKMFHITQIGVVLLTLTLCTGLLYMDNLFSKENV
HKAVLSIMAWFVYIVLLWGHYHEGWRGRRVIWFSFAGAFLLTLAYFGSRLVQEIMVR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=262, Percent_Identity=74.8091603053435, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 33212; Mature: 33212

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTISALTSENGWRGTLSTLYWLSNSLSRCSYNAMPVFSILALLAYSLSLGLIIPSLVRK
CCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
NSAYRRLALVSAVVALVCHAIALKNQIFDVGVGQNLTLLNIGSIVGLMICTIMTIVASQG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCC
RGWFLLPIVYSFAMINLALASLLPGEFITHLEASPEIFIHIGLALFAYATLIIAALYALQ
CCEEEHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHH
LAWLDYQLKHKKLTFNADMPPLMSIERKMFHITQIGVVLLTLTLCTGLLYMDNLFSKENV
HHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
HKAVLSIMAWFVYIVLLWGHYHEGWRGRRVIWFSFAGAFLLTLAYFGSRLVQEIMVR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQTISALTSENGWRGTLSTLYWLSNSLSRCSYNAMPVFSILALLAYSLSLGLIIPSLVRK
CCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
NSAYRRLALVSAVVALVCHAIALKNQIFDVGVGQNLTLLNIGSIVGLMICTIMTIVASQG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCC
RGWFLLPIVYSFAMINLALASLLPGEFITHLEASPEIFIHIGLALFAYATLIIAALYALQ
CCEEEHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHH
LAWLDYQLKHKKLTFNADMPPLMSIERKMFHITQIGVVLLTLTLCTGLLYMDNLFSKENV
HHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
HKAVLSIMAWFVYIVLLWGHYHEGWRGRRVIWFSFAGAFLLTLAYFGSRLVQEIMVR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]