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The map label for this gene is rpoE [H]

Identifier: 108801885

GI number: 108801885

Start: 5211474

End: 5212070

Strand: Reverse

Name: rpoE [H]

Synonym: Mmcs_4922

Alternate gene names: 108801885

Gene position: 5212070-5211474 (Counterclockwise)

Preceding gene: 108801886

Following gene: 108801884

Centisome position: 91.35

GC content: 65.66

Gene sequence:

>597_bases
ATGAAGGTCATCGAGTCCGAGGACATCGACTGCACCGCCGATCTGAAAGCCCGCTTCGCCGCCGATGTCTGGCCCCTGGT
CGATGTGCTGCTCCGCGGCGCGCGCCGCCTGACCCACAACGACGCCGACGCCGAAGACCTGCTTCAGGAAACCCTGGTCC
GCGCCTACACCGGATTCCACAACTTCCAGCCGGGCACCAACCTTCAGGCGTGGCTCTTCCGGATCCAGTACAACCAGTGG
GTAAGCGCCTACCGGTGGAAGGAGCGCCGCCCCGCGGAGGTGCTGTCCGACGAGATGGCGGACTTTGGTGTGCACCTGTC
GACCGGGCTGCGGTCCGCCGAATCCGAGGTGATCGATTCGCTTCCCGACGATGGGGTACGCGAGGCGTTGGGTCAGCTCT
CCGAGGGCTTCCGGACCGTGCTGTACTACGCCGACGTCGAGGGCTACACCTACGCCGAAACCGCTGCACTGATGGGCATC
CCGATCGGGACGGTGATGTCGCGGGTATCGCGGGCGCGTGTTCAGTTGCGCCGCCTGCTGGCGGACAGTTCCTGTGCACG
CGGTCGTTTCGCATCTGGGTCCTCTCAGGCGGCTTGA

Upstream 100 bases:

>100_bases
CATTGACCACGGATGACCAAGGGTCCTCTGGGGGCTCGGGGGCGCCAGTGTTGATCTCACAGCCCGATCGGGCTCGCAGA
AATCAACCGGAGGTACTCCC

Downstream 100 bases:

>100_bases
GATGACCGCGAACTACGACGACGAATGGCAGACTGCCCTCACGGTCGTGCAGTCCGTGCGCCCCGCCGCGGGTCATCCGA
GTGGACCGGCATGTCATCCA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKVIESEDIDCTADLKARFAADVWPLVDVLLRGARRLTHNDADAEDLLQETLVRAYTGFHNFQPGTNLQAWLFRIQYNQW
VSAYRWKERRPAEVLSDEMADFGVHLSTGLRSAESEVIDSLPDDGVREALGQLSEGFRTVLYYADVEGYTYAETAALMGI
PIGTVMSRVSRARVQLRRLLADSSCARGRFASGSSQAA

Sequences:

>Translated_198_residues
MKVIESEDIDCTADLKARFAADVWPLVDVLLRGARRLTHNDADAEDLLQETLVRAYTGFHNFQPGTNLQAWLFRIQYNQW
VSAYRWKERRPAEVLSDEMADFGVHLSTGLRSAESEVIDSLPDDGVREALGQLSEGFRTVLYYADVEGYTYAETAALMGI
PIGTVMSRVSRARVQLRRLLADSSCARGRFASGSSQAA
>Mature_198_residues
MKVIESEDIDCTADLKARFAADVWPLVDVLLRGARRLTHNDADAEDLLQETLVRAYTGFHNFQPGTNLQAWLFRIQYNQW
VSAYRWKERRPAEVLSDEMADFGVHLSTGLRSAESEVIDSLPDDGVREALGQLSEGFRTVLYYADVEGYTYAETAALMGI
PIGTVMSRVSRARVQLRRLLADSSCARGRFASGSSQAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=146, Percent_Identity=29.4520547945205, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22109; Mature: 22109

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIESEDIDCTADLKARFAADVWPLVDVLLRGARRLTHNDADAEDLLQETLVRAYTGFH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
NFQPGTNLQAWLFRIQYNQWVSAYRWKERRPAEVLSDEMADFGVHLSTGLRSAESEVIDS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
LPDDGVREALGQLSEGFRTVLYYADVEGYTYAETAALMGIPIGTVMSRVSRARVQLRRLL
CCCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ADSSCARGRFASGSSQAA
HCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKVIESEDIDCTADLKARFAADVWPLVDVLLRGARRLTHNDADAEDLLQETLVRAYTGFH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
NFQPGTNLQAWLFRIQYNQWVSAYRWKERRPAEVLSDEMADFGVHLSTGLRSAESEVIDS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
LPDDGVREALGQLSEGFRTVLYYADVEGYTYAETAALMGIPIGTVMSRVSRARVQLRRLL
CCCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ADSSCARGRFASGSSQAA
HCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]