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The map label for this gene is ligC

Identifier: 108801879

GI number: 108801879

Start: 5206046

End: 5207107

Strand: Reverse

Name: ligC

Synonym: Mmcs_4916

Alternate gene names: NA

Gene position: 5207107-5206046 (Counterclockwise)

Preceding gene: 108801880

Following gene: 108801878

Centisome position: 91.27

GC content: 66.76

Gene sequence:

>1062_bases
ATGGACACCATGGACCTACCCGTCATGCCGCCGCTGGAGCCGATGCTCGCCAAAGCCCAGGCGAAGGTGCCGACCGAATC
CGGCGTCTGGTCCTACGAACCGAAATGGGACGGCTTCCGCGCACTGGTGTTCCGCGACGGTGACGACGTCGTGCTGATGT
CCAGGAGCGGCAAGGACCTGGCGCGGTACTTCCCCGAGGTGCTCGACTTCGTGCGCGACGAACTGGCCCCGCGCTGTGTG
CTCGACGGCGAGATCGTCGTCCCCCGTGAGATCGGCGGTCGCACCCGGCTGGACTGGGAGTCGCTGAGCCAGCGCATCCA
TCCCGCCGAATCGCGCGTGCGCAAGCTCTCCGAGGAGACCCCCGCGCATTTCATCGGTTTCGACGCACTCGCCAGCGGTG
ACACCTCGCTGATGAAGGAGCCGTTCCGCGCCCGGCGTCAGGCGCTCATCGAGGCTGTCTCGCACAAGCAGTGGTGTCAT
GTCACGCGGACCACGGAGGACCCCGGGCTCGGTGCGCAGTGGCTCGAGGAGTTCGAGGGTGCCGGTCTCGACGGTGTGAT
CGCCAAACGCCTCGACGGCTCGTACCTGCCGGGTAAGCGGGAGATGGTCAAGGTCAAACACGCCCGCGACGCCGACTGCG
TGGCCATCGGCTACCGGATCCACAAGAGCGGGGAGGGGATCGGCTCGCTGCTGCTCGGACTGTACACCGACGAGGGCGAC
CTCCAGATGGTCGGCGGGGCAGCGTCTTTCACTGCCAAGGACCGGCTCAAGCTGCTCGCCGAACTCGAACCGCTGCGTGA
GGGGGACGAGGTGCGGGAGGGCGATCCGAGCCGTTGGAACTCCGCGGCGGACAAGCGCTGGATACCGATCCGGCCGGAGC
GGGTCGCGGAGGTGGCCTATGACCAGATGGAGGGAAACTCGGTGCAGGGGCGGAGATTCCGACATGCGGTCAAGTTCCGG
CGATGGCGGCCGGACCGCGATCCGGCCAGTTGCACGTTCGACCAACTGGAAGTTCCGCTGACCTACGACCTCTTCGACGT
GTTGGAGACCCAGGATGGCTAG

Upstream 100 bases:

>100_bases
ACCCACCGCCACCCGCGCCGCACCCCGACTACGGCGACGACCCGCCACCGTTCTGACAGAACTCCGATGACATTGTCGCG
ATACACGGGTCTACGTGAGT

Downstream 100 bases:

>100_bases
TGCGGCAACGGAAATCGATGTCGACGGAGTCAAGGTCCGGCTGACCAACCCGGACAAACCGTACTTCCCGAAGCTCGGCA
AAGACGGCACCAAGGGCAAG

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MDTMDLPVMPPLEPMLAKAQAKVPTESGVWSYEPKWDGFRALVFRDGDDVVLMSRSGKDLARYFPEVLDFVRDELAPRCV
LDGEIVVPREIGGRTRLDWESLSQRIHPAESRVRKLSEETPAHFIGFDALASGDTSLMKEPFRARRQALIEAVSHKQWCH
VTRTTEDPGLGAQWLEEFEGAGLDGVIAKRLDGSYLPGKREMVKVKHARDADCVAIGYRIHKSGEGIGSLLLGLYTDEGD
LQMVGGAASFTAKDRLKLLAELEPLREGDEVREGDPSRWNSAADKRWIPIRPERVAEVAYDQMEGNSVQGRRFRHAVKFR
RWRPDRDPASCTFDQLEVPLTYDLFDVLETQDG

Sequences:

>Translated_353_residues
MDTMDLPVMPPLEPMLAKAQAKVPTESGVWSYEPKWDGFRALVFRDGDDVVLMSRSGKDLARYFPEVLDFVRDELAPRCV
LDGEIVVPREIGGRTRLDWESLSQRIHPAESRVRKLSEETPAHFIGFDALASGDTSLMKEPFRARRQALIEAVSHKQWCH
VTRTTEDPGLGAQWLEEFEGAGLDGVIAKRLDGSYLPGKREMVKVKHARDADCVAIGYRIHKSGEGIGSLLLGLYTDEGD
LQMVGGAASFTAKDRLKLLAELEPLREGDEVREGDPSRWNSAADKRWIPIRPERVAEVAYDQMEGNSVQGRRFRHAVKFR
RWRPDRDPASCTFDQLEVPLTYDLFDVLETQDG
>Mature_353_residues
MDTMDLPVMPPLEPMLAKAQAKVPTESGVWSYEPKWDGFRALVFRDGDDVVLMSRSGKDLARYFPEVLDFVRDELAPRCV
LDGEIVVPREIGGRTRLDWESLSQRIHPAESRVRKLSEETPAHFIGFDALASGDTSLMKEPFRARRQALIEAVSHKQWCH
VTRTTEDPGLGAQWLEEFEGAGLDGVIAKRLDGSYLPGKREMVKVKHARDADCVAIGYRIHKSGEGIGSLLLGLYTDEGD
LQMVGGAASFTAKDRLKLLAELEPLREGDEVREGDPSRWNSAADKRWIPIRPERVAEVAYDQMEGNSVQGRRFRHAVKFR
RWRPDRDPASCTFDQLEVPLTYDLFDVLETQDG

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 39823; Mature: 39823

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTMDLPVMPPLEPMLAKAQAKVPTESGVWSYEPKWDGFRALVFRDGDDVVLMSRSGKDL
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHH
ARYFPEVLDFVRDELAPRCVLDGEIVVPREIGGRTRLDWESLSQRIHPAESRVRKLSEET
HHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHC
PAHFIGFDALASGDTSLMKEPFRARRQALIEAVSHKQWCHVTRTTEDPGLGAQWLEEFEG
CCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCCHHHHHHHCC
AGLDGVIAKRLDGSYLPGKREMVKVKHARDADCVAIGYRIHKSGEGIGSLLLGLYTDEGD
CCCCHHHHHHCCCCCCCCCHHHEEECCCCCCCEEEEEEEEECCCCCHHHHHHHEECCCCC
LQMVGGAASFTAKDRLKLLAELEPLREGDEVREGDPSRWNSAADKRWIPIRPERVAEVAY
EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
DQMEGNSVQGRRFRHAVKFRRWRPDRDPASCTFDQLEVPLTYDLFDVLETQDG
HHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MDTMDLPVMPPLEPMLAKAQAKVPTESGVWSYEPKWDGFRALVFRDGDDVVLMSRSGKDL
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHH
ARYFPEVLDFVRDELAPRCVLDGEIVVPREIGGRTRLDWESLSQRIHPAESRVRKLSEET
HHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHC
PAHFIGFDALASGDTSLMKEPFRARRQALIEAVSHKQWCHVTRTTEDPGLGAQWLEEFEG
CCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCCHHHHHHHCC
AGLDGVIAKRLDGSYLPGKREMVKVKHARDADCVAIGYRIHKSGEGIGSLLLGLYTDEGD
CCCCHHHHHHCCCCCCCCCHHHEEECCCCCCCEEEEEEEEECCCCCHHHHHHHEECCCCC
LQMVGGAASFTAKDRLKLLAELEPLREGDEVREGDPSRWNSAADKRWIPIRPERVAEVAY
EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
DQMEGNSVQGRRFRHAVKFRRWRPDRDPASCTFDQLEVPLTYDLFDVLETQDG
HHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]