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The map label for this gene is ykoU [H]

Identifier: 108801878

GI number: 108801878

Start: 5205010

End: 5206053

Strand: Reverse

Name: ykoU [H]

Synonym: Mmcs_4915

Alternate gene names: 108801878

Gene position: 5206053-5205010 (Counterclockwise)

Preceding gene: 108801879

Following gene: 108801876

Centisome position: 91.25

GC content: 67.82

Gene sequence:

>1044_bases
ATGGCTAGTGCGGCAACGGAAATCGATGTCGACGGAGTCAAGGTCCGGCTGACCAACCCGGACAAACCGTACTTCCCGAA
GCTCGGCAAAGACGGCACCAAGGGCAAGCTCGTCGACTACTACCTGGCCGTGGCGGACCGGATGGTGGCGCTGCTGCGGG
ACCGCCCCGTGCATCTGCAGCGGTTCCCCGACGGCATCGAGGGCGAGGAGATCTACCAGAAGCGGGTGCCGCAGAAGCGC
CCCGACTACCTCGAGACGTGCACGGTGACCTTCCCGTCCGGCCGCACCGCCGACGCCCTGAAGATCACCCACCCGTCGGC
GATCGCCTGGGCCGCTCAGATGGGAACCGTCACGTTGCACCCCTGGCAGGTCCGCTGCCCGGACACCGAGCATCCCGACG
AGCTGCGGATCGATCTCGACCCGCAGCCGGGCACCGGATTCGCCGAGGCCCGCAGCGTTGCGGTCGACGTCCTCAAACCC
CTGCTCGACGAACTCGGCCTGGTCGGTTACCCCAAGACCTCGGGCGGCCGTGGCGTCCACGTGTTCCTGCGCATCGCGAC
CGACTGGGATTTCATTGCCGTGCGACGTGCCGGCATCGCGCTGGCGCGGGAGGTCGAGCGACGCGCCCCCAATGCGGTGA
CCACATCGTGGTGGAAGGAAGAGCGGGGCCGGCGGCTGTTCATCGACTACAACCAGAACGCGCGCGACCGCACCTTCGCG
TCGGCGTACTCGGCGCGCAAAACCCCGATCGCCACGGTGTCGACACCGTTGACGTGGGAGGAATTACGCGTCGCCGAACC
CGACGACTACACGATCGCCACCGTGCCGGACTTCGTCGCCGGCCGACCGGACCCGTGGGCGGACATCGACAAGAAGGCGC
AGTCGATCGACACGCTGCTGAAGATGGTCGAGGCCGACGAGGAGCGGGGCCTCGGCGACCTGCCCTATCCGCCGAACTAT
CCGAAAATGCCCGGCGAGCCGCCGCGCGTGCAGCCGAGTAAGAAGGTCGCGGAGCACTGGGACGAGGACGGCAACCGCCG
CTAG

Upstream 100 bases:

>100_bases
TTCCGGCGATGGCGGCCGGACCGCGATCCGGCCAGTTGCACGTTCGACCAACTGGAAGTTCCGCTGACCTACGACCTCTT
CGACGTGTTGGAGACCCAGG

Downstream 100 bases:

>100_bases
GTCGGCACCACGCCACGAGCCTGCGGCAGCGGCAGATCGGTGTAGGTGGCGATCCCCGGTTCGGCGGCCACCACCGCCGG
GATGGCGTGGATCGGTGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MASAATEIDVDGVKVRLTNPDKPYFPKLGKDGTKGKLVDYYLAVADRMVALLRDRPVHLQRFPDGIEGEEIYQKRVPQKR
PDYLETCTVTFPSGRTADALKITHPSAIAWAAQMGTVTLHPWQVRCPDTEHPDELRIDLDPQPGTGFAEARSVAVDVLKP
LLDELGLVGYPKTSGGRGVHVFLRIATDWDFIAVRRAGIALAREVERRAPNAVTTSWWKEERGRRLFIDYNQNARDRTFA
SAYSARKTPIATVSTPLTWEELRVAEPDDYTIATVPDFVAGRPDPWADIDKKAQSIDTLLKMVEADEERGLGDLPYPPNY
PKMPGEPPRVQPSKKVAEHWDEDGNRR

Sequences:

>Translated_347_residues
MASAATEIDVDGVKVRLTNPDKPYFPKLGKDGTKGKLVDYYLAVADRMVALLRDRPVHLQRFPDGIEGEEIYQKRVPQKR
PDYLETCTVTFPSGRTADALKITHPSAIAWAAQMGTVTLHPWQVRCPDTEHPDELRIDLDPQPGTGFAEARSVAVDVLKP
LLDELGLVGYPKTSGGRGVHVFLRIATDWDFIAVRRAGIALAREVERRAPNAVTTSWWKEERGRRLFIDYNQNARDRTFA
SAYSARKTPIATVSTPLTWEELRVAEPDDYTIATVPDFVAGRPDPWADIDKKAQSIDTLLKMVEADEERGLGDLPYPPNY
PKMPGEPPRVQPSKKVAEHWDEDGNRR
>Mature_346_residues
ASAATEIDVDGVKVRLTNPDKPYFPKLGKDGTKGKLVDYYLAVADRMVALLRDRPVHLQRFPDGIEGEEIYQKRVPQKRP
DYLETCTVTFPSGRTADALKITHPSAIAWAAQMGTVTLHPWQVRCPDTEHPDELRIDLDPQPGTGFAEARSVAVDVLKPL
LDELGLVGYPKTSGGRGVHVFLRIATDWDFIAVRRAGIALAREVERRAPNAVTTSWWKEERGRRLFIDYNQNARDRTFAS
AYSARKTPIATVSTPLTWEELRVAEPDDYTIATVPDFVAGRPDPWADIDKKAQSIDTLLKMVEADEERGLGDLPYPPNYP
KMPGEPPRVQPSKKVAEHWDEDGNRR

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 38949; Mature: 38818

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASAATEIDVDGVKVRLTNPDKPYFPKLGKDGTKGKLVDYYLAVADRMVALLRDRPVHLQ
CCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
RFPDGIEGEEIYQKRVPQKRPDYLETCTVTFPSGRTADALKITHPSAIAWAAQMGTVTLH
HCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHCCEEEEC
PWQVRCPDTEHPDELRIDLDPQPGTGFAEARSVAVDVLKPLLDELGLVGYPKTSGGRGVH
CEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
VFLRIATDWDFIAVRRAGIALAREVERRAPNAVTTSWWKEERGRRLFIDYNQNARDRTFA
EEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHH
SAYSARKTPIATVSTPLTWEELRVAEPDDYTIATVPDFVAGRPDPWADIDKKAQSIDTLL
HHHHCCCCCEEEECCCCCHHHHEECCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHH
KMVEADEERGLGDLPYPPNYPKMPGEPPRVQPSKKVAEHWDEDGNRR
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ASAATEIDVDGVKVRLTNPDKPYFPKLGKDGTKGKLVDYYLAVADRMVALLRDRPVHLQ
CCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
RFPDGIEGEEIYQKRVPQKRPDYLETCTVTFPSGRTADALKITHPSAIAWAAQMGTVTLH
HCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHCCEEEEC
PWQVRCPDTEHPDELRIDLDPQPGTGFAEARSVAVDVLKPLLDELGLVGYPKTSGGRGVH
CEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
VFLRIATDWDFIAVRRAGIALAREVERRAPNAVTTSWWKEERGRRLFIDYNQNARDRTFA
EEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHH
SAYSARKTPIATVSTPLTWEELRVAEPDDYTIATVPDFVAGRPDPWADIDKKAQSIDTLL
HHHHCCCCCEEEECCCCCHHHHEECCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHH
KMVEADEERGLGDLPYPPNYPKMPGEPPRVQPSKKVAEHWDEDGNRR
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]