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The map label for this gene is int [H]

Identifier: 108801791

GI number: 108801791

Start: 5111630

End: 5112931

Strand: Reverse

Name: int [H]

Synonym: Mmcs_4828

Alternate gene names: 108801791

Gene position: 5112931-5111630 (Counterclockwise)

Preceding gene: 108801794

Following gene: 108801787

Centisome position: 89.61

GC content: 63.9

Gene sequence:

>1302_bases
ATGCAGAGACGTAATCGTCGCGCTGGTGTCGAAGATCGTTGGCGGCGGGCAGATGGCAGCCCAACGGCGCGGGCCAACAC
GGGGCGTCGTTGGCTGGCCCGCTACGTCGACGACCAGGGGCAAGAAAACACCAGGTCCTTCGATCGCAAAGTGGATGCCC
AAGCCTGGCTCGATGAGATCACTGCCATGCAGGTGACCGGCGCCTACGTCGCTCCGAAGGCGGGCCGTGTGAGCGTCGGC
GAACTGTATGCGAAATGGGTCGGAACGCAGAGCCACCTCAAGAAGACCACCGCGTCGACTCGGAGGTACACCTGGCCGGT
GTACGTCGAGCCTCGTTGGTCTGCGGTGGCTGTCGCCGACGTGCAGACGACGGACGTGCGTGCCTGGGTCCAGTCAATGA
CGTCCTCGGGTGCTGGTGCCGCCACAGTTGAGAATGCCGTCGGCATCTTGCGTCAGATTCTGGAGATGGCAGTCGAGGAC
CGACGGATCGCGCGCAATCCGTGCACGGGGATCAAGCTTCCCCGCCGCAAGCGGCGACCACGCGGCTACCTGACGCACCG
CCAGGTGGAGCAGCTCGCTGTTGAAGTCGGGACGGATGCGACGGTCGTGCGCTTCTTGGCCTACACCGGTCTGCGCTGGG
GAGAAATGGCGGCGCTGCGCGTCGGTGACGCGAAGATGCTTCGACGTCGCGTCCACGTGCGGGAATCCGTGACGGAGGTC
GAAGGGCAACTGGAGTGGTCGTCACCCAAGTCCTACGAGCAGCGGATGGTGCCTTTCCCCGCGTTTCTTGCTGACGAACT
GGCCGTCCTGATGATTGGGAAGAAGCCCGATGACCTCATCTTCGCCGCGCCCGAAGGCGGAGTTCTGAGAGTGTCGAACT
GGCGCCGCCGAGTCTTCAACAAAGCGGTCAAGCGGCTCCTCGAGAAGGATGCGACCTTCCCAGTCGTAACTCCGCACGAT
CTCCGTCACACCGCCGCATCCCTGGCCATCAGTGCCGGCGCCAATGTCAAAGCCGTGCAGACCATGCTGGGGCACGCCTC
GGCGGTGCTGACCCTGGACACTTACGCCGACCTGTTCCCGGACGATCTGGAGATGGTTTCCGCGGCTTTGGACGATGCGC
GAACCAAGTCCCTGAAAGCTGCTGCGGACCAACTGCGGACTGGAACGAAAGAAGGCCCCGAACTGGAGAACCAGTCAGGG
CCTTCTACCTGCGATCACGCGAGTCGGGGTGGCGGGATTCGAACCCACGACCTCTTCGTCCCGAACGAAGCGCGCTACCA
AGCTGCGCCACACCCCGCGTGA

Upstream 100 bases:

>100_bases
CACCACCATGGGCAACTTCGATCGGAAATTGGTGAAATTCGTTTCTTTTCAGTAGTTGTCGGTTCTCAATGGCACACTCG
CTGTTACGGAGGAGGGGACT

Downstream 100 bases:

>100_bases
AGCGTTGAAAGGGTATCGCACCGGTGCCTCGGAAAGCCAAACGGCTCCCGCGGCAGGATCGCGACACGAGTTCCCGGCGG
CGCGGAATGCCGGGGGTTGT

Product: phage integrase

Products: NA

Alternate protein names: Integrase [H]

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MQRRNRRAGVEDRWRRADGSPTARANTGRRWLARYVDDQGQENTRSFDRKVDAQAWLDEITAMQVTGAYVAPKAGRVSVG
ELYAKWVGTQSHLKKTTASTRRYTWPVYVEPRWSAVAVADVQTTDVRAWVQSMTSSGAGAATVENAVGILRQILEMAVED
RRIARNPCTGIKLPRRKRRPRGYLTHRQVEQLAVEVGTDATVVRFLAYTGLRWGEMAALRVGDAKMLRRRVHVRESVTEV
EGQLEWSSPKSYEQRMVPFPAFLADELAVLMIGKKPDDLIFAAPEGGVLRVSNWRRRVFNKAVKRLLEKDATFPVVTPHD
LRHTAASLAISAGANVKAVQTMLGHASAVLTLDTYADLFPDDLEMVSAALDDARTKSLKAAADQLRTGTKEGPELENQSG
PSTCDHASRGGGIRTHDLFVPNEARYQAAPHPA

Sequences:

>Translated_433_residues
MQRRNRRAGVEDRWRRADGSPTARANTGRRWLARYVDDQGQENTRSFDRKVDAQAWLDEITAMQVTGAYVAPKAGRVSVG
ELYAKWVGTQSHLKKTTASTRRYTWPVYVEPRWSAVAVADVQTTDVRAWVQSMTSSGAGAATVENAVGILRQILEMAVED
RRIARNPCTGIKLPRRKRRPRGYLTHRQVEQLAVEVGTDATVVRFLAYTGLRWGEMAALRVGDAKMLRRRVHVRESVTEV
EGQLEWSSPKSYEQRMVPFPAFLADELAVLMIGKKPDDLIFAAPEGGVLRVSNWRRRVFNKAVKRLLEKDATFPVVTPHD
LRHTAASLAISAGANVKAVQTMLGHASAVLTLDTYADLFPDDLEMVSAALDDARTKSLKAAADQLRTGTKEGPELENQSG
PSTCDHASRGGGIRTHDLFVPNEARYQAAPHPA
>Mature_433_residues
MQRRNRRAGVEDRWRRADGSPTARANTGRRWLARYVDDQGQENTRSFDRKVDAQAWLDEITAMQVTGAYVAPKAGRVSVG
ELYAKWVGTQSHLKKTTASTRRYTWPVYVEPRWSAVAVADVQTTDVRAWVQSMTSSGAGAATVENAVGILRQILEMAVED
RRIARNPCTGIKLPRRKRRPRGYLTHRQVEQLAVEVGTDATVVRFLAYTGLRWGEMAALRVGDAKMLRRRVHVRESVTEV
EGQLEWSSPKSYEQRMVPFPAFLADELAVLMIGKKPDDLIFAAPEGGVLRVSNWRRRVFNKAVKRLLEKDATFPVVTPHD
LRHTAASLAISAGANVKAVQTMLGHASAVLTLDTYADLFPDDLEMVSAALDDARTKSLKAAADQLRTGTKEGPELENQSG
PSTCDHASRGGGIRTHDLFVPNEARYQAAPHPA

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome (By Similarity). [C]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016177
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004191
- InterPro:   IPR013087 [H]

Pfam domain/function: PF02920 Integrase_DNA; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48092; Mature: 48092

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRNRRAGVEDRWRRADGSPTARANTGRRWLARYVDDQGQENTRSFDRKVDAQAWLDEI
CCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TAMQVTGAYVAPKAGRVSVGELYAKWVGTQSHLKKTTASTRRYTWPVYVEPRWSAVAVAD
HHHHCCCCEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCEEEEEC
VQTTDVRAWVQSMTSSGAGAATVENAVGILRQILEMAVEDRRIARNPCTGIKLPRRKRRP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
RGYLTHRQVEQLAVEVGTDATVVRFLAYTGLRWGEMAALRVGDAKMLRRRVHVRESVTEV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHH
EGQLEWSSPKSYEQRMVPFPAFLADELAVLMIGKKPDDLIFAAPEGGVLRVSNWRRRVFN
HCCEECCCCCHHHHHCCCCHHHHHHCCEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHH
KAVKRLLEKDATFPVVTPHDLRHTAASLAISAGANVKAVQTMLGHASAVLTLDTYADLFP
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEHHHHHHCC
DDLEMVSAALDDARTKSLKAAADQLRTGTKEGPELENQSGPSTCDHASRGGGIRTHDLFV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEC
PNEARYQAAPHPA
CCCCCCCCCCCCC
>Mature Secondary Structure
MQRRNRRAGVEDRWRRADGSPTARANTGRRWLARYVDDQGQENTRSFDRKVDAQAWLDEI
CCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TAMQVTGAYVAPKAGRVSVGELYAKWVGTQSHLKKTTASTRRYTWPVYVEPRWSAVAVAD
HHHHCCCCEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCEEEEEC
VQTTDVRAWVQSMTSSGAGAATVENAVGILRQILEMAVEDRRIARNPCTGIKLPRRKRRP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
RGYLTHRQVEQLAVEVGTDATVVRFLAYTGLRWGEMAALRVGDAKMLRRRVHVRESVTEV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHH
EGQLEWSSPKSYEQRMVPFPAFLADELAVLMIGKKPDDLIFAAPEGGVLRVSNWRRRVFN
HCCEECCCCCHHHHHCCCCHHHHHHCCEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHH
KAVKRLLEKDATFPVVTPHDLRHTAASLAISAGANVKAVQTMLGHASAVLTLDTYADLFP
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEHHHHHHCC
DDLEMVSAALDDARTKSLKAAADQLRTGTKEGPELENQSGPSTCDHASRGGGIRTHDLFV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEC
PNEARYQAAPHPA
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12200547 [H]