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The map label for this gene is 108801787

Identifier: 108801787

GI number: 108801787

Start: 5106124

End: 5106480

Strand: Reverse

Name: 108801787

Synonym: Mmcs_4824

Alternate gene names: NA

Gene position: 5106480-5106124 (Counterclockwise)

Preceding gene: 108801791

Following gene: 108801784

Centisome position: 89.5

GC content: 68.07

Gene sequence:

>357_bases
GTGTCTAGTATTCGGCCCGCGGTGCGCAAGACCATGACAACCGTCCCCTCCTCGCCTCCCGTACAAGGTGCTGAGGCCGA
AGCGCGGATCGCCTGGGTCTCCCAGGCCCGCTGCCGGCAGGCCGACCCGGACGAGCTCTTCGTCCGCGGCGCCGCGCAGC
GCAAGGCCGCGGTGATCTGTCGTCACTGCCCGGTCATCCTCGAATGCGGTGCGGACGCCCTCGACAACCGCGTCGAGTTC
GGCGTGTGGGGTGGTATGACCGAACGTCAGCGTCGGGCGTTGCTCAAGCAGCATCCCGAGGTCGTTTCCTGGGCCGAGTT
CTTCTCCGCGCAGCGCAAACACCGCAGCGCGGTCTGA

Upstream 100 bases:

>100_bases
TCCAGGACACACTAACTGGCGCAGTGTGGCGTAGATCGCATCAGCGTTCTACTCCGGAGGATCACCGTCGGGTGCGACGG
CTGGAACGAAGGGATCGCTG

Downstream 100 bases:

>100_bases
GCTCTACTTCTCCCGAATGCCGCCGTCAGGCGGCGCTGGCCGTCCCGGTGATCTGATCGGCGATCGCCCGCAGCGCGTCG
AGGTCTGAGACGTCGAACGG

Product: transcription factor WhiB

Products: NA

Alternate protein names: WhiB Family Transcriptional Regulator; Regulatory Protein; WhiB-Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator WhiB; WhiB Family Regulatory Protein; WhiB-Related Protein; WhiB Protein; Transcriptional Regulatory; WhiB Transcriptional Regulator

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MSSIRPAVRKTMTTVPSSPPVQGAEAEARIAWVSQARCRQADPDELFVRGAAQRKAAVICRHCPVILECGADALDNRVEF
GVWGGMTERQRRALLKQHPEVVSWAEFFSAQRKHRSAV

Sequences:

>Translated_118_residues
MSSIRPAVRKTMTTVPSSPPVQGAEAEARIAWVSQARCRQADPDELFVRGAAQRKAAVICRHCPVILECGADALDNRVEF
GVWGGMTERQRRALLKQHPEVVSWAEFFSAQRKHRSAV
>Mature_117_residues
SSIRPAVRKTMTTVPSSPPVQGAEAEARIAWVSQARCRQADPDELFVRGAAQRKAAVICRHCPVILECGADALDNRVEFG
VWGGMTERQRRALLKQHPEVVSWAEFFSAQRKHRSAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13126; Mature: 12995

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIRPAVRKTMTTVPSSPPVQGAEAEARIAWVSQARCRQADPDELFVRGAAQRKAAVIC
CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH
RHCPVILECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWAEFFSAQRKHRSAV
HHCCCCEECCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSIRPAVRKTMTTVPSSPPVQGAEAEARIAWVSQARCRQADPDELFVRGAAQRKAAVIC
CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH
RHCPVILECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWAEFFSAQRKHRSAV
HHCCCCEECCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA