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The map label for this gene is rhaB [H]

Identifier: 108801352

GI number: 108801352

Start: 4665292

End: 4666737

Strand: Reverse

Name: rhaB [H]

Synonym: Mmcs_4389

Alternate gene names: 108801352

Gene position: 4666737-4665292 (Counterclockwise)

Preceding gene: 108801353

Following gene: 108801351

Centisome position: 81.79

GC content: 71.85

Gene sequence:

>1446_bases
ATGAGGAGCGGGCAGGTCGCGGCGGTCGACCTCGGCGCCACCAGCGGCCGCGTCATGCTCGCCGATGTCGGGCCCGACCG
CCTCGACATGACGGCGGTGGCCCGCTTCCCCAATGACCCGGTGCGGGTGTGGAACGGGCGGCGCAACGCGCTGCACTGGG
ACATCACCGGCCTCTACGGCCGGGTGTGCCAGGGATTGTCGGCCGCCGCGAGAGCGGCCGACGGGCTGGTCGGGATCGGG
GTGGACTCGTGGGCGGTGGATTACGGGTTGCTGCGCGAGGGACTGCTGCTCGGCACCCCGCACCACTACCGGGATGACCG
CACCGCCACTGGCGTGGACCTCGTACACGCCGTCGTCGACTCCGAGGAACTCTACCGGCGCAACGGCATTCAGTTCCTGC
CGTTCAACACGGTCTACCAGTTGGCGGTGGAACGCGCCGACGGGCTGCTCGACTCGGCCGACACGGTGCTGCTCGTACCT
GATCTCGTCAACTACTGGCTCACCGGCCGCGCCGCCGCCGAGCGGACCAACGCGTCGACCACCGGACTGCTCGGGCTCGA
CGGCCACTGGGACACCACCCTCATGCGCCGGATCGGGCTGCGGCCGAGCCTGTTCCGTGAACTCGTCGAGCCCGGAAGTG
TACTCGGCCCGCTGCGGCCGGAGGTCGCGACGCCGCTCGGGCTCACCGACGCCGTGCAGGTGGTCGCGGTCGGTTCGCAC
GATACGGCGTCGGCGGTCGCGGCGATCCCGATGCGCCCGCAGGAGGCGGCCTACATCTCCTGCGGCACCTGGGGTCTGGT
CGGCGTCGAGTTGCCCGCACCGGTGGTCTCCGAGGAGAGCCGCACCGCCAACTTCACCAACGAGATCGGGGTCGAGGGCC
GGGTCCGGTTCCTGCGCAACGTGATGGGTACCTGGCTGCTGTCGGAGACGGTGCGGCAGTACGAACGTGACGGCGCGCCT
GGCGATCTGGCGGTGCTGCTCGATCAGGCGGCCGCGGCGTCCGCCCCCGCCGACGTGTTCGACACCGACGACCCGCGGTT
CATGCCGCCCGGGGATATGCCTGCCCGGATCGGGTCCTGGTACCGCGAACGCGGCCTGCCCGCCCCCGACGGGCCCGCGG
AAACCGTGCGCGCCATCGTCGAAAGCCTCGCCGCCGCGTTCGCCGCGGCGGTCGACACCGCGGCGCGGTTGTCCGGCGTG
GACGTCGCGACGGTGCACATGGTCGGCGGTGGATGCCGGAACACACTGCTGTGCCAACTGACCGCCGACCGGCTCGGCAG
ACCCCTGCTGGCCGGCCCAGTCGAGGCCACCGCGCTGGGTAACGTGCTGCTCACCGCCCGCGCCACCGGACTCGTCGACG
GGGGCCTCGACGCCCTGCGCACGCTGGTCGCTGACCGGTTCCCCGCGACCCGCTACGTCCCGTCTGGTGCAATGGTGTCG
TGGTGA

Upstream 100 bases:

>100_bases
TCGGACTTCTCGCACACCACCGGGTTGCATGTGCCGGTCGACGCGGGCGTCGCCGCGGCTTTCTTGCGATGAGCGCTTGC
GCGAAGAGCCGAGGATGCCG

Downstream 100 bases:

>100_bases
GTATGCGGGAGGTGGCCGCCGCGGCGGCCGTCTCCGTCGGCACGGTGTCCAACGTGCTCAACTCACCCGACAAGGTGGCC
CCGGCCACCGTCGCCCGCGT

Product: carbohydrate kinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MRSGQVAAVDLGATSGRVMLADVGPDRLDMTAVARFPNDPVRVWNGRRNALHWDITGLYGRVCQGLSAAARAADGLVGIG
VDSWAVDYGLLREGLLLGTPHHYRDDRTATGVDLVHAVVDSEELYRRNGIQFLPFNTVYQLAVERADGLLDSADTVLLVP
DLVNYWLTGRAAAERTNASTTGLLGLDGHWDTTLMRRIGLRPSLFRELVEPGSVLGPLRPEVATPLGLTDAVQVVAVGSH
DTASAVAAIPMRPQEAAYISCGTWGLVGVELPAPVVSEESRTANFTNEIGVEGRVRFLRNVMGTWLLSETVRQYERDGAP
GDLAVLLDQAAAASAPADVFDTDDPRFMPPGDMPARIGSWYRERGLPAPDGPAETVRAIVESLAAAFAAAVDTAARLSGV
DVATVHMVGGGCRNTLLCQLTADRLGRPLLAGPVEATALGNVLLTARATGLVDGGLDALRTLVADRFPATRYVPSGAMVS
W

Sequences:

>Translated_481_residues
MRSGQVAAVDLGATSGRVMLADVGPDRLDMTAVARFPNDPVRVWNGRRNALHWDITGLYGRVCQGLSAAARAADGLVGIG
VDSWAVDYGLLREGLLLGTPHHYRDDRTATGVDLVHAVVDSEELYRRNGIQFLPFNTVYQLAVERADGLLDSADTVLLVP
DLVNYWLTGRAAAERTNASTTGLLGLDGHWDTTLMRRIGLRPSLFRELVEPGSVLGPLRPEVATPLGLTDAVQVVAVGSH
DTASAVAAIPMRPQEAAYISCGTWGLVGVELPAPVVSEESRTANFTNEIGVEGRVRFLRNVMGTWLLSETVRQYERDGAP
GDLAVLLDQAAAASAPADVFDTDDPRFMPPGDMPARIGSWYRERGLPAPDGPAETVRAIVESLAAAFAAAVDTAARLSGV
DVATVHMVGGGCRNTLLCQLTADRLGRPLLAGPVEATALGNVLLTARATGLVDGGLDALRTLVADRFPATRYVPSGAMVS
W
>Mature_481_residues
MRSGQVAAVDLGATSGRVMLADVGPDRLDMTAVARFPNDPVRVWNGRRNALHWDITGLYGRVCQGLSAAARAADGLVGIG
VDSWAVDYGLLREGLLLGTPHHYRDDRTATGVDLVHAVVDSEELYRRNGIQFLPFNTVYQLAVERADGLLDSADTVLLVP
DLVNYWLTGRAAAERTNASTTGLLGLDGHWDTTLMRRIGLRPSLFRELVEPGSVLGPLRPEVATPLGLTDAVQVVAVGSH
DTASAVAAIPMRPQEAAYISCGTWGLVGVELPAPVVSEESRTANFTNEIGVEGRVRFLRNVMGTWLLSETVRQYERDGAP
GDLAVLLDQAAAASAPADVFDTDDPRFMPPGDMPARIGSWYRERGLPAPDGPAETVRAIVESLAAAFAAAVDTAARLSGV
DVATVHMVGGGCRNTLLCQLTADRLGRPLLAGPVEATALGNVLLTARATGLVDGGLDALRTLVADRFPATRYVPSGAMVS
W

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=481, Percent_Identity=37.6299376299376, Blast_Score=285, Evalue=3e-78,
Organism=Escherichia coli, GI1789168, Length=447, Percent_Identity=24.8322147651007, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787789, Length=398, Percent_Identity=26.8844221105528, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 51044; Mature: 51044

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSGQVAAVDLGATSGRVMLADVGPDRLDMTAVARFPNDPVRVWNGRRNALHWDITGLYG
CCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCCCCEEECCCCCCEEEEHHHHHH
RVCQGLSAAARAADGLVGIGVDSWAVDYGLLREGLLLGTPHHYRDDRTATGVDLVHAVVD
HHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHC
SEELYRRNGIQFLPFNTVYQLAVERADGLLDSADTVLLVPDLVNYWLTGRAAAERTNAST
HHHHHHHCCCEECCHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHCCCHHHHCCCCCC
TGLLGLDGHWDTTLMRRIGLRPSLFRELVEPGSVLGPLRPEVATPLGLTDAVQVVAVGSH
CEEEECCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEEEECCC
DTASAVAAIPMRPQEAAYISCGTWGLVGVELPAPVVSEESRTANFTNEIGVEGRVRFLRN
CCCHHEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHHHH
VMGTWLLSETVRQYERDGAPGDLAVLLDQAAAASAPADVFDTDDPRFMPPGDMPARIGSW
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
YRERGLPAPDGPAETVRAIVESLAAAFAAAVDTAARLSGVDVATVHMVGGGCRNTLLCQL
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEE
TADRLGRPLLAGPVEATALGNVLLTARATGLVDGGLDALRTLVADRFPATRYVPSGAMVS
EHHHCCCCCCCCCCCHHHHCCCCEEHHHHCCCCCCHHHHHHHHHHCCCCCEECCCCCCCC
W
C
>Mature Secondary Structure
MRSGQVAAVDLGATSGRVMLADVGPDRLDMTAVARFPNDPVRVWNGRRNALHWDITGLYG
CCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCCCCEEECCCCCCEEEEHHHHHH
RVCQGLSAAARAADGLVGIGVDSWAVDYGLLREGLLLGTPHHYRDDRTATGVDLVHAVVD
HHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHC
SEELYRRNGIQFLPFNTVYQLAVERADGLLDSADTVLLVPDLVNYWLTGRAAAERTNAST
HHHHHHHCCCEECCHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHCCCHHHHCCCCCC
TGLLGLDGHWDTTLMRRIGLRPSLFRELVEPGSVLGPLRPEVATPLGLTDAVQVVAVGSH
CEEEECCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEEEECCC
DTASAVAAIPMRPQEAAYISCGTWGLVGVELPAPVVSEESRTANFTNEIGVEGRVRFLRN
CCCHHEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHHHH
VMGTWLLSETVRQYERDGAPGDLAVLLDQAAAASAPADVFDTDDPRFMPPGDMPARIGSW
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
YRERGLPAPDGPAETVRAIVESLAAAFAAAVDTAARLSGVDVATVHMVGGGCRNTLLCQL
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEE
TADRLGRPLLAGPVEATALGNVLLTARATGLVDGGLDALRTLVADRFPATRYVPSGAMVS
EHHHCCCCCCCCCCCHHHHCCCCEEHHHHCCCCCCHHHHHHHHHHCCCCCEECCCCCCCC
W
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]