Click here to switch to the map view.

The map label for this gene is ycjO [C]

Identifier: 108801320

GI number: 108801320

Start: 4635896

End: 4636873

Strand: Reverse

Name: ycjO [C]

Synonym: Mmcs_4356

Alternate gene names: 108801320

Gene position: 4636873-4635896 (Counterclockwise)

Preceding gene: 108801321

Following gene: 108801319

Centisome position: 81.27

GC content: 63.5

Gene sequence:

>978_bases
ATGACCGTTACCGCTGAGACCGACGCCGCCGGCGCCGACGAAGAGGCTGTCGCCGAACGCGTCCGCAAGATCAAGGAGGC
CCAGGGCCTCGGCGTGAGCCGCGCCGAGGGCTGGCGACGGCGTGGACCGCTGCTCCCGGCGCTGATCTTCATGATCATCG
TCACGCAGATACCGTTCCTGTTCACCCTCTACTACTCGACCCTGTCGTGGAACCTGGTGCGCCCCGGGTCCCGTCAGTTC
GTCGGGTTCCAGAACTACGTCGCCGTCGTCAAAGACAGCCAGTTCTGGTCGGTTGCGTTCAACACCGTCATCCTCATCGT
CGGTGTGGTGCTCATCTCGGCGTTCCTGGGCCTGCTGCTGGCCCTGTTGTTGGACCGGGCATTCCTCGGCCGCGGCGTCG
TCCGCACGCTGCTCATCACCCCGTTCCTCGTCACCCCTGTTGCGGCGGCACTGATCTGGAAGACGACCATTCTCGATCCC
AACAACGGCATCCTGAACTGGCTGCTGTCCCTGGTGGGCATCGGCAGGGTCGACTGGATCGGACAGTTCCCGCTGACGAT
GGTGATGGTCGAACTGATCTGGCAGTGGACGCCGTTCATGATGCTTCTGATCCTCGCCGGCCTCCAGTCGATGCCTCGCG
ACATCCTGGAGGCCGGTCGAGTCGACGGTGCGGGCGCCGTTCAACTCTTCCGAGAGCTGACGCTGCCCCACCTTCGGCGC
TTCATCGAACTGGGGGTCGTCCTCGGGGCGATCTACCTGATGAACACCTTCGACGCCATCTACATGATGACCCAGGGTGG
ACCCGGCATCGCGAGTGCGAACCTGCCGTTCTACATCTACCAGCGCGCGTTCCTGGGCTTCGACATGGGCCAGGCGGCGG
CGATGGGCGTCGTGGTGGTCATCTTCACCATCGCCATCGCCAACTTCGCCCTGCGGTTGATCTTCAAATCGTTCTCCGGC
AAGGAAGAGGCAGTCTGA

Upstream 100 bases:

>100_bases
AGATCAGCGCGGCGATCGCCGGACAGAAGTCGGTGGACGACGCGCTCGCCCAGTCACAGGAATACGCCGAGGTCGTCGGC
CGCACGTATCAGGAGAAGTG

Downstream 100 bases:

>100_bases
TGACCACCACAGTGGAAGAGACCACGCCGACAACGGGTTCCGATATCACCGCGAAGAAGAAGTCCCGCAAGTTCTCCGTC
TGGGGCGTGCTGGCATGGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTVTAETDAAGADEEAVAERVRKIKEAQGLGVSRAEGWRRRGPLLPALIFMIIVTQIPFLFTLYYSTLSWNLVRPGSRQF
VGFQNYVAVVKDSQFWSVAFNTVILIVGVVLISAFLGLLLALLLDRAFLGRGVVRTLLITPFLVTPVAAALIWKTTILDP
NNGILNWLLSLVGIGRVDWIGQFPLTMVMVELIWQWTPFMMLLILAGLQSMPRDILEAGRVDGAGAVQLFRELTLPHLRR
FIELGVVLGAIYLMNTFDAIYMMTQGGPGIASANLPFYIYQRAFLGFDMGQAAAMGVVVVIFTIAIANFALRLIFKSFSG
KEEAV

Sequences:

>Translated_325_residues
MTVTAETDAAGADEEAVAERVRKIKEAQGLGVSRAEGWRRRGPLLPALIFMIIVTQIPFLFTLYYSTLSWNLVRPGSRQF
VGFQNYVAVVKDSQFWSVAFNTVILIVGVVLISAFLGLLLALLLDRAFLGRGVVRTLLITPFLVTPVAAALIWKTTILDP
NNGILNWLLSLVGIGRVDWIGQFPLTMVMVELIWQWTPFMMLLILAGLQSMPRDILEAGRVDGAGAVQLFRELTLPHLRR
FIELGVVLGAIYLMNTFDAIYMMTQGGPGIASANLPFYIYQRAFLGFDMGQAAAMGVVVVIFTIAIANFALRLIFKSFSG
KEEAV
>Mature_324_residues
TVTAETDAAGADEEAVAERVRKIKEAQGLGVSRAEGWRRRGPLLPALIFMIIVTQIPFLFTLYYSTLSWNLVRPGSRQFV
GFQNYVAVVKDSQFWSVAFNTVILIVGVVLISAFLGLLLALLLDRAFLGRGVVRTLLITPFLVTPVAAALIWKTTILDPN
NGILNWLLSLVGIGRVDWIGQFPLTMVMVELIWQWTPFMMLLILAGLQSMPRDILEAGRVDGAGAVQLFRELTLPHLRRF
IELGVVLGAIYLMNTFDAIYMMTQGGPGIASANLPFYIYQRAFLGFDMGQAAAMGVVVVIFTIAIANFALRLIFKSFSGK
EEAV

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=236, Percent_Identity=31.3559322033898, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789861, Length=249, Percent_Identity=29.718875502008, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790465, Length=253, Percent_Identity=28.8537549407115, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35878; Mature: 35747

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTAETDAAGADEEAVAERVRKIKEAQGLGVSRAEGWRRRGPLLPALIFMIIVTQIPFL
CEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
FTLYYSTLSWNLVRPGSRQFVGFQNYVAVVKDSQFWSVAFNTVILIVGVVLISAFLGLLL
HHHHHHHHHCCEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLLDRAFLGRGVVRTLLITPFLVTPVAAALIWKTTILDPNNGILNWLLSLVGIGRVDWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCHHHH
GQFPLTMVMVELIWQWTPFMMLLILAGLQSMPRDILEAGRVDGAGAVQLFRELTLPHLRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FIELGVVLGAIYLMNTFDAIYMMTQGGPGIASANLPFYIYQRAFLGFDMGQAAAMGVVVV
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
IFTIAIANFALRLIFKSFSGKEEAV
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TVTAETDAAGADEEAVAERVRKIKEAQGLGVSRAEGWRRRGPLLPALIFMIIVTQIPFL
EEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
FTLYYSTLSWNLVRPGSRQFVGFQNYVAVVKDSQFWSVAFNTVILIVGVVLISAFLGLLL
HHHHHHHHHCCEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLLDRAFLGRGVVRTLLITPFLVTPVAAALIWKTTILDPNNGILNWLLSLVGIGRVDWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCHHHH
GQFPLTMVMVELIWQWTPFMMLLILAGLQSMPRDILEAGRVDGAGAVQLFRELTLPHLRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FIELGVVLGAIYLMNTFDAIYMMTQGGPGIASANLPFYIYQRAFLGFDMGQAAAMGVVVV
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
IFTIAIANFALRLIFKSFSGKEEAV
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]