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The map label for this gene is ydeS [H]

Identifier: 108801038

GI number: 108801038

Start: 4342862

End: 4343506

Strand: Reverse

Name: ydeS [H]

Synonym: Mmcs_4074

Alternate gene names: 108801038

Gene position: 4343506-4342862 (Counterclockwise)

Preceding gene: 108801040

Following gene: 108801037

Centisome position: 76.13

GC content: 73.95

Gene sequence:

>645_bases
GTGACGGAGCGGGCGGTGCGGCGACCCGGCGGACGCACCGCGGCGGTGCGCGCCGCCGTGCTGCGGGCCGCCGAAGACCT
TCTCGTCGAGGGTGGTCTGCACGCACTGGAGTTGACCGCGGTGGCGGAGCGGGCGGGGGTCGGCAAGTCGACCGTCTACC
GCCGCTGGTCGACCGTGCCGGTCCTCGTCGCCGACGTGTTGCACGAGATGGCCGAACAGTCTGTGTCTCGGGCCCGTACC
GGCACGCTGGACGGCGATCTGCGGGCCAGTGCCCGCCTCGTGCGACGCACGCTGACCGATCCCCGCCAGGGCCGGCTCTT
CGGCGCCGTCATCGCCGCAGCGACCTACGACCCGCGGACGGCGCAGGCTCTCGAGCGGTTCTACGACCGCCGCGTCGCGG
AGTGGTCCGCATGCGTCACCGATGCGGTGGCCCGCGGGGAGGCGCCGGCGCGCACCGACGGCGCAGCCGTCATCCGCCAC
CTGTCCGCGCCGCTGTACTACCAGTTCCTCACGACCACGACACCGTTGAGCACGCGCGACGCCGACCGGGCCGTGGCGGC
CACGGTTGCCGCCACGGCCGCCGGGGTGTTCGTCGTCAGCAAACGGAGACCGGGGGGTTCCCGTTCGCCCGACCTGGGTA
CCTAG

Upstream 100 bases:

>100_bases
CCAACCCGCCGATACTCCATGAATCCTCCTTAATGAAACGATTGTCTCGATAGAGCCGCAACGGGTCTTGATGGGAATTC
ATTCCCGTTAGGGTGGTGGG

Downstream 100 bases:

>100_bases
ACACGGTGAAAAACGTGCGAGTCCTGGTCACCGGCGCCACGGGATATGTGGGATCCCGCCTGGTCAGCGCCCTGGTCGAC
GTCGGCGCCGACGTAGTGGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTERAVRRPGGRTAAVRAAVLRAAEDLLVEGGLHALELTAVAERAGVGKSTVYRRWSTVPVLVADVLHEMAEQSVSRART
GTLDGDLRASARLVRRTLTDPRQGRLFGAVIAAATYDPRTAQALERFYDRRVAEWSACVTDAVARGEAPARTDGAAVIRH
LSAPLYYQFLTTTTPLSTRDADRAVAATVAATAAGVFVVSKRRPGGSRSPDLGT

Sequences:

>Translated_214_residues
MTERAVRRPGGRTAAVRAAVLRAAEDLLVEGGLHALELTAVAERAGVGKSTVYRRWSTVPVLVADVLHEMAEQSVSRART
GTLDGDLRASARLVRRTLTDPRQGRLFGAVIAAATYDPRTAQALERFYDRRVAEWSACVTDAVARGEAPARTDGAAVIRH
LSAPLYYQFLTTTTPLSTRDADRAVAATVAATAAGVFVVSKRRPGGSRSPDLGT
>Mature_213_residues
TERAVRRPGGRTAAVRAAVLRAAEDLLVEGGLHALELTAVAERAGVGKSTVYRRWSTVPVLVADVLHEMAEQSVSRARTG
TLDGDLRASARLVRRTLTDPRQGRLFGAVIAAATYDPRTAQALERFYDRRVAEWSACVTDAVARGEAPARTDGAAVIRHL
SAPLYYQFLTTTTPLSTRDADRAVAATVAATAAGVFVVSKRRPGGSRSPDLGT

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22839; Mature: 22708

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERAVRRPGGRTAAVRAAVLRAAEDLLVEGGLHALELTAVAERAGVGKSTVYRRWSTVP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCHH
VLVADVLHEMAEQSVSRARTGTLDGDLRASARLVRRTLTDPRQGRLFGAVIAAATYDPRT
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH
AQALERFYDRRVAEWSACVTDAVARGEAPARTDGAAVIRHLSAPLYYQFLTTTTPLSTRD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCC
ADRAVAATVAATAAGVFVVSKRRPGGSRSPDLGT
HHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TERAVRRPGGRTAAVRAAVLRAAEDLLVEGGLHALELTAVAERAGVGKSTVYRRWSTVP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCHH
VLVADVLHEMAEQSVSRARTGTLDGDLRASARLVRRTLTDPRQGRLFGAVIAAATYDPRT
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH
AQALERFYDRRVAEWSACVTDAVARGEAPARTDGAAVIRHLSAPLYYQFLTTTTPLSTRD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCC
ADRAVAATVAATAAGVFVVSKRRPGGSRSPDLGT
HHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]