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The map label for this gene is aidB [H]

Identifier: 108800992

GI number: 108800992

Start: 4292906

End: 4294654

Strand: Reverse

Name: aidB [H]

Synonym: Mmcs_4028

Alternate gene names: 108800992

Gene position: 4294654-4292906 (Counterclockwise)

Preceding gene: 108800993

Following gene: 108800990

Centisome position: 75.27

GC content: 70.04

Gene sequence:

>1749_bases
GTGGACCGGCTTCCGTTCAGCACCGCCGACAAAGCCGAGCGTTACCGCACCGAGCGCTTCGCCGGGGCCGTCGGCCTGAA
CTGGTACACGACCGATCCCACGCTGCAGTTCACGCTCGCCTACTACGTGCCGCCGGACCAATTGCCCGTTGCCGAAACAC
ATCTGACGCGCATCGGGGAGTTGATGGGCGGTGCGGTCGCCCGATGGGCCGAGGAGACCGACCGCAACCCGCCGCGGCTG
GAGCGCTACGACAAGTGGGGCCACGACGTCAGCCGGGTCGTCATGCCACCGTCGTTCACCGCAGCCAAGCGCGCGGTGCT
CGACGCCCAACAGGCGCTACGCGACGATATGCGCGCCGCCGGGGGCCGCTCGTCGATCCCGATGTTCGCCGCGAACTACC
TGCTCAACCAGGCCGACATCGGGTTGGGCTGCGCGCTGGGCACCGGTGGCGGCATGGTGGCTGCCCTGGTGGCCGCGTAT
GCACCCGCCGACGTACGCGACCACGTGCTCGCGAAGTTCGAGTCCGGTGAGTGGGCGGGGGAGACGGCCCAGATGCTCAC
CGAACGCACCGGAGGTTCCGACCTCGGCGCGCTGGAGACGACGGCGACCCGCCGGGGCGATGCCTGGCGGCTCGACGGGT
TCAAGTGGTTCGCGTCGAACTGCGACGGTGAGGCCTTCGTCGTCCTGGCCAAACCCGAGGGAGCGCCCGACTCCGGGCGC
GGTGTCGCCTCGTTCCTCGTCCTGCGCACCCGGCGCGACGGCTCCCGCAACGGGGTGCGCATCCGGCGGCTGAAGAACAA
ACTCGGCACCCGTTCGGTGGCCTCCGGAGAGGTGGAGTTCGTCGACGCCGAGGCGTTCCTGCTCTCGGGTGAGCCCAGCA
CCGAGGCGGGACCGTCCGACGGCAAGGGGCTGGGCCGGATGATGGAACTCACCAACGCCGCCCGCCTCGGCATCGCACTG
TTCGCCGTCGGGAATGCGCGACGCGCCCTGGTCGAATCGCTGACCTATGCGCGGAATCGGCACGCGTTCGGGTCCGCGCT
GATCGACAAACCGCTGATGCGGCGCAAACTCGCCGAGATGATCGTCGACGTCGAGGCCGCCCAGGCGCTGGTGTTCGATT
GCACGGGGCTGGCCAATCACCGTCAGCCGCGGCGCGTGCGGCAGCGCATCGCGGTGCCGGTCACCAAACTCAAGGTGTGC
CGGCTCGGCATCACGGCCGCGTCCGATGCGGTCGAGATCCACGGCGGCAACGGCTACATCGAGGACTGGCCGGTGGCCCG
GTTGCTGCGCGATGCACAGGTCAACACCATCTGGGAGGGCCCCGACAACATCCTGTGCCTCGACGTCGCGCGCGGCATCC
GGCGCGCTCACGCGCACGAACAGCTGCTGAGCCGGTTGCACGACGCGGTGTCGGTGTCCGACGACGAGGCGACCACCGCG
CTGGTGTCCCGGCGCGTCGACGATCTCGACGCCGCGATCACGGCCTGGACGAAGCTCCACGGTGCGGTCGCCGAGGCACG
CCTGTTCCCGCTGGCGCAGTTCATGGCCGACGTGTATGCGGGCGCTCTGCTGACCGAGCAGGCGGCGTGGGAACGCGCGG
AACGCGGCGGTGAGCGGAAAGCGTTGGTCGCCCGGCTGTATGCCCGGCGCTACCTCGACGATCCCGGCCCGCTGCGCGGT
ATCGACGACGATCGCGACGAGGCGTTGGAGCGGTTCGACGAGCTGGTCGACGGCGCGTTCAGCGGCTGA

Upstream 100 bases:

>100_bases
ACTGGCGCTGACCGCCACCGACGAGCGGATCGCCGCCGCCGCCGAACGGCTTTCGGCGAATCAGGGTTAGCCCGCCGGCA
CCCGTAATACCGTCGATGCC

Downstream 100 bases:

>100_bases
GCACTTTCGGTGGCGCGAAGACCCAGGGCGAGCACCAGCCGGTCGTCGGGGTCGTCGAGCGAGGTGCCGAGCAGCGTCTC
GATGCGCCGGACCCGGTAGC

Product: acyl-CoA dehydrogenase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MDRLPFSTADKAERYRTERFAGAVGLNWYTTDPTLQFTLAYYVPPDQLPVAETHLTRIGELMGGAVARWAEETDRNPPRL
ERYDKWGHDVSRVVMPPSFTAAKRAVLDAQQALRDDMRAAGGRSSIPMFAANYLLNQADIGLGCALGTGGGMVAALVAAY
APADVRDHVLAKFESGEWAGETAQMLTERTGGSDLGALETTATRRGDAWRLDGFKWFASNCDGEAFVVLAKPEGAPDSGR
GVASFLVLRTRRDGSRNGVRIRRLKNKLGTRSVASGEVEFVDAEAFLLSGEPSTEAGPSDGKGLGRMMELTNAARLGIAL
FAVGNARRALVESLTYARNRHAFGSALIDKPLMRRKLAEMIVDVEAAQALVFDCTGLANHRQPRRVRQRIAVPVTKLKVC
RLGITAASDAVEIHGGNGYIEDWPVARLLRDAQVNTIWEGPDNILCLDVARGIRRAHAHEQLLSRLHDAVSVSDDEATTA
LVSRRVDDLDAAITAWTKLHGAVAEARLFPLAQFMADVYAGALLTEQAAWERAERGGERKALVARLYARRYLDDPGPLRG
IDDDRDEALERFDELVDGAFSG

Sequences:

>Translated_582_residues
MDRLPFSTADKAERYRTERFAGAVGLNWYTTDPTLQFTLAYYVPPDQLPVAETHLTRIGELMGGAVARWAEETDRNPPRL
ERYDKWGHDVSRVVMPPSFTAAKRAVLDAQQALRDDMRAAGGRSSIPMFAANYLLNQADIGLGCALGTGGGMVAALVAAY
APADVRDHVLAKFESGEWAGETAQMLTERTGGSDLGALETTATRRGDAWRLDGFKWFASNCDGEAFVVLAKPEGAPDSGR
GVASFLVLRTRRDGSRNGVRIRRLKNKLGTRSVASGEVEFVDAEAFLLSGEPSTEAGPSDGKGLGRMMELTNAARLGIAL
FAVGNARRALVESLTYARNRHAFGSALIDKPLMRRKLAEMIVDVEAAQALVFDCTGLANHRQPRRVRQRIAVPVTKLKVC
RLGITAASDAVEIHGGNGYIEDWPVARLLRDAQVNTIWEGPDNILCLDVARGIRRAHAHEQLLSRLHDAVSVSDDEATTA
LVSRRVDDLDAAITAWTKLHGAVAEARLFPLAQFMADVYAGALLTEQAAWERAERGGERKALVARLYARRYLDDPGPLRG
IDDDRDEALERFDELVDGAFSG
>Mature_582_residues
MDRLPFSTADKAERYRTERFAGAVGLNWYTTDPTLQFTLAYYVPPDQLPVAETHLTRIGELMGGAVARWAEETDRNPPRL
ERYDKWGHDVSRVVMPPSFTAAKRAVLDAQQALRDDMRAAGGRSSIPMFAANYLLNQADIGLGCALGTGGGMVAALVAAY
APADVRDHVLAKFESGEWAGETAQMLTERTGGSDLGALETTATRRGDAWRLDGFKWFASNCDGEAFVVLAKPEGAPDSGR
GVASFLVLRTRRDGSRNGVRIRRLKNKLGTRSVASGEVEFVDAEAFLLSGEPSTEAGPSDGKGLGRMMELTNAARLGIAL
FAVGNARRALVESLTYARNRHAFGSALIDKPLMRRKLAEMIVDVEAAQALVFDCTGLANHRQPRRVRQRIAVPVTKLKVC
RLGITAASDAVEIHGGNGYIEDWPVARLLRDAQVNTIWEGPDNILCLDVARGIRRAHAHEQLLSRLHDAVSVSDDEATTA
LVSRRVDDLDAAITAWTKLHGAVAEARLFPLAQFMADVYAGALLTEQAAWERAERGGERKALVARLYARRYLDDPGPLRG
IDDDRDEALERFDELVDGAFSG

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=335, Percent_Identity=28.955223880597, Blast_Score=116, Evalue=6e-26,
Organism=Homo sapiens, GI4501857, Length=313, Percent_Identity=27.1565495207668, Blast_Score=109, Evalue=6e-24,
Organism=Homo sapiens, GI4501859, Length=270, Percent_Identity=29.6296296296296, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI4557231, Length=277, Percent_Identity=28.8808664259928, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI187960098, Length=277, Percent_Identity=28.8808664259928, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI226958412, Length=290, Percent_Identity=26.551724137931, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI226958414, Length=290, Percent_Identity=26.551724137931, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI4557235, Length=324, Percent_Identity=25.9259259259259, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI76496475, Length=324, Percent_Identity=25.9259259259259, Blast_Score=87, Evalue=6e-17,
Organism=Homo sapiens, GI21361497, Length=330, Percent_Identity=27.5757575757576, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI7656849, Length=269, Percent_Identity=25.6505576208178, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI4503943, Length=322, Percent_Identity=25.776397515528, Blast_Score=76, Evalue=9e-14,
Organism=Homo sapiens, GI7669494, Length=296, Percent_Identity=26.0135135135135, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI87082384, Length=507, Percent_Identity=31.9526627218935, Blast_Score=183, Evalue=3e-47,
Organism=Escherichia coli, GI87081958, Length=328, Percent_Identity=25.9146341463415, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1786223, Length=273, Percent_Identity=24.9084249084249, Blast_Score=81, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI86563383, Length=542, Percent_Identity=28.5977859778598, Blast_Score=168, Evalue=9e-42,
Organism=Caenorhabditis elegans, GI86563381, Length=542, Percent_Identity=28.5977859778598, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17508101, Length=301, Percent_Identity=29.9003322259136, Blast_Score=118, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17506239, Length=324, Percent_Identity=26.2345679012346, Blast_Score=108, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17569725, Length=269, Percent_Identity=27.8810408921933, Blast_Score=108, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17533517, Length=335, Percent_Identity=25.3731343283582, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17534899, Length=282, Percent_Identity=26.241134751773, Blast_Score=99, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17538396, Length=326, Percent_Identity=27.3006134969325, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17570075, Length=370, Percent_Identity=25.6756756756757, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71990804, Length=202, Percent_Identity=30.1980198019802, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71985184, Length=282, Percent_Identity=24.822695035461, Blast_Score=78, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17534353, Length=322, Percent_Identity=22.9813664596273, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982178, Length=240, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17505929, Length=436, Percent_Identity=25.2293577981651, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32563615, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17551932, Length=295, Percent_Identity=26.1016949152542, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356377, Length=301, Percent_Identity=29.9003322259136, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24666513, Length=418, Percent_Identity=24.8803827751196, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24646207, Length=271, Percent_Identity=28.4132841328413, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21355753, Length=359, Percent_Identity=25.3481894150418, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24660351, Length=278, Percent_Identity=28.4172661870504, Blast_Score=95, Evalue=2e-19,
Organism=Drosophila melanogaster, GI281363737, Length=335, Percent_Identity=25.6716417910448, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 63497; Mature: 63497

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLPFSTADKAERYRTERFAGAVGLNWYTTDPTLQFTLAYYVPPDQLPVAETHLTRIGE
CCCCCCCCCHHHHHHHHHHHHCEECCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHH
LMGGAVARWAEETDRNPPRLERYDKWGHDVSRVVMPPSFTAAKRAVLDAQQALRDDMRAA
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHC
GGRSSIPMFAANYLLNQADIGLGCALGTGGGMVAALVAAYAPADVRDHVLAKFESGEWAG
CCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
ETAQMLTERTGGSDLGALETTATRRGDAWRLDGFKWFASNCDGEAFVVLAKPEGAPDSGR
HHHHHHHHCCCCCCCCCHHHHHCCCCCCEEECCCCEECCCCCCCEEEEEECCCCCCCCCC
GVASFLVLRTRRDGSRNGVRIRRLKNKLGTRSVASGEVEFVDAEAFLLSGEPSTEAGPSD
HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECEEEEECCCCCCCCCCCC
GKGLGRMMELTNAARLGIALFAVGNARRALVESLTYARNRHAFGSALIDKPLMRRKLAEM
CHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
IVDVEAAQALVFDCTGLANHRQPRRVRQRIAVPVTKLKVCRLGITAASDAVEIHGGNGYI
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCEECCCEEEEECCCCCC
EDWPVARLLRDAQVNTIWEGPDNILCLDVARGIRRAHAHEQLLSRLHDAVSVSDDEATTA
CCCHHHHHHHHCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LVSRRVDDLDAAITAWTKLHGAVAEARLFPLAQFMADVYAGALLTEQAAWERAERGGERK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ALVARLYARRYLDDPGPLRGIDDDRDEALERFDELVDGAFSG
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDRLPFSTADKAERYRTERFAGAVGLNWYTTDPTLQFTLAYYVPPDQLPVAETHLTRIGE
CCCCCCCCCHHHHHHHHHHHHCEECCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHH
LMGGAVARWAEETDRNPPRLERYDKWGHDVSRVVMPPSFTAAKRAVLDAQQALRDDMRAA
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHC
GGRSSIPMFAANYLLNQADIGLGCALGTGGGMVAALVAAYAPADVRDHVLAKFESGEWAG
CCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
ETAQMLTERTGGSDLGALETTATRRGDAWRLDGFKWFASNCDGEAFVVLAKPEGAPDSGR
HHHHHHHHCCCCCCCCCHHHHHCCCCCCEEECCCCEECCCCCCCEEEEEECCCCCCCCCC
GVASFLVLRTRRDGSRNGVRIRRLKNKLGTRSVASGEVEFVDAEAFLLSGEPSTEAGPSD
HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECEEEEECCCCCCCCCCCC
GKGLGRMMELTNAARLGIALFAVGNARRALVESLTYARNRHAFGSALIDKPLMRRKLAEM
CHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
IVDVEAAQALVFDCTGLANHRQPRRVRQRIAVPVTKLKVCRLGITAASDAVEIHGGNGYI
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCEECCCEEEEECCCCCC
EDWPVARLLRDAQVNTIWEGPDNILCLDVARGIRRAHAHEQLLSRLHDAVSVSDDEATTA
CCCHHHHHHHHCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LVSRRVDDLDAAITAWTKLHGAVAEARLFPLAQFMADVYAGALLTEQAAWERAERGGERK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ALVARLYARRYLDDPGPLRGIDDDRDEALERFDELVDGAFSG
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]