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The map label for this gene is ykcB [H]

Identifier: 108800888

GI number: 108800888

Start: 4179488

End: 4181353

Strand: Reverse

Name: ykcB [H]

Synonym: Mmcs_3924

Alternate gene names: 108800888

Gene position: 4181353-4179488 (Counterclockwise)

Preceding gene: 108800889

Following gene: 108800887

Centisome position: 73.29

GC content: 71.76

Gene sequence:

>1866_bases
ATGGGTCGAGTGACCCTGACCCTTGACGCCGAGCAGACGCAGAATCGCCCGAATGATCGCCCGAGAGCGCGATTCTCTGT
CTGGTCGCCGAGGATCGGGCTCGGCGTGCTGCTGGCCGGGACCGCCGTGCTGTACCTGTGGAACCTGTCGGCCAGCGGAT
GGGCCAACGCGTTCTATTCGGCCGCCGCGCAGGCCGGGTCCCAGAACTGGACGGCCATGCTGTTCGGGTCCAGTGATGCG
GCCAACGCCATCACCGTCGACAAGACGCCCGCGGCGCTGTGGGTGATGGACCTGTCGGTACGGGTGTTCGGGCTGAACTC
GTGGAGCATCCTGGCGCCGCAGGCCCTGATGGGAGTGGCCGCCGTCGCGGTGCTGTACGCGGCGGTGCGGCGTGTCAGCG
GACCGGGCGCCGCGCTGCTGGCCGGCGCGGTGCTCGCGGTGACCCCCGTGGCCGCGTTGATGTTCCGGTTCAACAACCCC
GACGCGCTGCTGGTCCTGCTGCTCGTCGTGGCCGGCTACTGCGTGACCCGGGCCTGCGAACCCGATGCGCGCCGATGGTG
GCTGATCGCCGCCGGGGTGGCCGTCGGATTCGGCTTCCTGGCCAAGATGCTGCAGGCATTCCTCGTGCTCCCGGGTTTCG
TGGCGGCCTATCTGCTCGCCGGCAGCCGTCCGGTGGGCCGCCGGATCCTCGACCTGGCAGGCGCGGCCGCGGCGATGGTG
GCGGCCGCCGGCTGGTATCTGCTGCTCGCCGAGCTGTGGCCGGCCGACTCCCGGCCATACATCGGCGGATCGCAGCACAA
CAGCATCGTCGAACTGGCCTTGGGTTACAACGGTTTCGGCCGACTCACCGGTGACGAACCGGGTGGGTTGGGCAACCTCA
ACCACGACGTCGGGGCGGGGCGGCTGTTCGGTTTCGGGATGGGTCTCGACATCGCGTGGCTGCTGCCCGCGGCGCTGATC
TGCCTCGGCGCCGCGCTGCTGCTCACCCGCCGGACACCCCGCACCGACACCACCCGCGCGGCCCTGCTCAGCTGGGGCGG
GTGGCTGGTCGTGACGGCCGTGGTGTTCAGCTTCGCCAACGGCATCGTGCACTCGTACTACACGGTCGCGCTGGCACCGG
CGATCGCCGCGGTCATCGGCATCGGCTCACACCTGCTGTGGCGCAACAGGTCCCGACCGTGGTGTGCCGTGTCCATGGCC
GGTGCAGTGCTCGTCACCGCGGTGCTGGCCGCGGTGCTGCTGTCGCGCAACGCCGACTGGATGCCGTGGCTGCGGGCGGC
CGTCGCGGTCGGGGGAGTCGGTGCTGCGGTGCTGCTGATCGTGGCGGGCCGGCTGCCCGACGGTGTCGTCCGCGCCGCCG
CCGGACTGGCCGTCGTGGTGTGTCTCGCATCGCCCGCGGCCTATTCGGTCGCCACCGCGGCGGCCCCGCACACCGGCGCC
ATCCCGTCGGTGGGGCCGGCGCGCGGGGGTTTCGGCGGACCGCCCGGACTGCTGAGCTCACCCGAGCCCGGTGAACAGCT
CACCGCGCTGCTGGCCCGCGACGCCCACGCGTACCGGTGGACCGCCGCGGTGGTCGGGTCGAACAACGCGGCCGGCTACC
AATTGGCAAGCGGCGCACCGGTGATGGCGCTGGGCGGGTTCAACGGCACCGATCCGGCGCCCACCCTCGAACAGTTCCAA
CGTCACGTCGCCGACGGCGATGTGCACTACTTCATCGGAAGCCGCTCACCCCTCGGCTTCGGCCGCGGCGCCGAGCAGAG
CGGCAGCCGGGCCGCCGCGGACATCGCGGACTGGGTGCAGGCGCGTTACCCGGGGCGAACCGTCGACGGTGTCGTCGTCT
ACGACCTCACCCGGGCCCCGGCGTGA

Upstream 100 bases:

>100_bases
TGGACAGCGCGCCGGGCCGCACCGAGTTCGTGGTGAGGTTGCCGGGCGCACAGCTGACACACAGGGAAGACCAATCCGGC
GCCTAGTCCGGGTGGCCACC

Downstream 100 bases:

>100_bases
CTCACAGCAGGCGCATAGCTCGGCCCCACCCTGGGCTCACGCTGCGCCGCGAACATGGTTCTCATGACAGAACTCGCCGT
GGAACTCGACGCTGATCGCG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 621; Mature: 620

Protein sequence:

>621_residues
MGRVTLTLDAEQTQNRPNDRPRARFSVWSPRIGLGVLLAGTAVLYLWNLSASGWANAFYSAAAQAGSQNWTAMLFGSSDA
ANAITVDKTPAALWVMDLSVRVFGLNSWSILAPQALMGVAAVAVLYAAVRRVSGPGAALLAGAVLAVTPVAALMFRFNNP
DALLVLLLVVAGYCVTRACEPDARRWWLIAAGVAVGFGFLAKMLQAFLVLPGFVAAYLLAGSRPVGRRILDLAGAAAAMV
AAAGWYLLLAELWPADSRPYIGGSQHNSIVELALGYNGFGRLTGDEPGGLGNLNHDVGAGRLFGFGMGLDIAWLLPAALI
CLGAALLLTRRTPRTDTTRAALLSWGGWLVVTAVVFSFANGIVHSYYTVALAPAIAAVIGIGSHLLWRNRSRPWCAVSMA
GAVLVTAVLAAVLLSRNADWMPWLRAAVAVGGVGAAVLLIVAGRLPDGVVRAAAGLAVVVCLASPAAYSVATAAAPHTGA
IPSVGPARGGFGGPPGLLSSPEPGEQLTALLARDAHAYRWTAAVVGSNNAAGYQLASGAPVMALGGFNGTDPAPTLEQFQ
RHVADGDVHYFIGSRSPLGFGRGAEQSGSRAAADIADWVQARYPGRTVDGVVVYDLTRAPA

Sequences:

>Translated_621_residues
MGRVTLTLDAEQTQNRPNDRPRARFSVWSPRIGLGVLLAGTAVLYLWNLSASGWANAFYSAAAQAGSQNWTAMLFGSSDA
ANAITVDKTPAALWVMDLSVRVFGLNSWSILAPQALMGVAAVAVLYAAVRRVSGPGAALLAGAVLAVTPVAALMFRFNNP
DALLVLLLVVAGYCVTRACEPDARRWWLIAAGVAVGFGFLAKMLQAFLVLPGFVAAYLLAGSRPVGRRILDLAGAAAAMV
AAAGWYLLLAELWPADSRPYIGGSQHNSIVELALGYNGFGRLTGDEPGGLGNLNHDVGAGRLFGFGMGLDIAWLLPAALI
CLGAALLLTRRTPRTDTTRAALLSWGGWLVVTAVVFSFANGIVHSYYTVALAPAIAAVIGIGSHLLWRNRSRPWCAVSMA
GAVLVTAVLAAVLLSRNADWMPWLRAAVAVGGVGAAVLLIVAGRLPDGVVRAAAGLAVVVCLASPAAYSVATAAAPHTGA
IPSVGPARGGFGGPPGLLSSPEPGEQLTALLARDAHAYRWTAAVVGSNNAAGYQLASGAPVMALGGFNGTDPAPTLEQFQ
RHVADGDVHYFIGSRSPLGFGRGAEQSGSRAAADIADWVQARYPGRTVDGVVVYDLTRAPA
>Mature_620_residues
GRVTLTLDAEQTQNRPNDRPRARFSVWSPRIGLGVLLAGTAVLYLWNLSASGWANAFYSAAAQAGSQNWTAMLFGSSDAA
NAITVDKTPAALWVMDLSVRVFGLNSWSILAPQALMGVAAVAVLYAAVRRVSGPGAALLAGAVLAVTPVAALMFRFNNPD
ALLVLLLVVAGYCVTRACEPDARRWWLIAAGVAVGFGFLAKMLQAFLVLPGFVAAYLLAGSRPVGRRILDLAGAAAAMVA
AAGWYLLLAELWPADSRPYIGGSQHNSIVELALGYNGFGRLTGDEPGGLGNLNHDVGAGRLFGFGMGLDIAWLLPAALIC
LGAALLLTRRTPRTDTTRAALLSWGGWLVVTAVVFSFANGIVHSYYTVALAPAIAAVIGIGSHLLWRNRSRPWCAVSMAG
AVLVTAVLAAVLLSRNADWMPWLRAAVAVGGVGAAVLLIVAGRLPDGVVRAAAGLAVVVCLASPAAYSVATAAAPHTGAI
PSVGPARGGFGGPPGLLSSPEPGEQLTALLARDAHAYRWTAAVVGSNNAAGYQLASGAPVMALGGFNGTDPAPTLEQFQR
HVADGDVHYFIGSRSPLGFGRGAEQSGSRAAADIADWVQARYPGRTVDGVVVYDLTRAPA

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 39 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003342 [H]

Pfam domain/function: PF02366 PMT [H]

EC number: NA

Molecular weight: Translated: 64227; Mature: 64096

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRVTLTLDAEQTQNRPNDRPRARFSVWSPRIGLGVLLAGTAVLYLWNLSASGWANAFYS
CCEEEEEEECHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHEEEEEECCCCHHHHHHHH
AAAQAGSQNWTAMLFGSSDAANAITVDKTPAALWVMDLSVRVFGLNSWSILAPQALMGVA
HHHHCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHH
AVAVLYAAVRRVSGPGAALLAGAVLAVTPVAALMFRFNNPDALLVLLLVVAGYCVTRACE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
PDARRWWLIAAGVAVGFGFLAKMLQAFLVLPGFVAAYLLAGSRPVGRRILDLAGAAAAMV
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AAAGWYLLLAELWPADSRPYIGGSQHNSIVELALGYNGFGRLTGDEPGGLGNLNHDVGAG
HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
RLFGFGMGLDIAWLLPAALICLGAALLLTRRTPRTDTTRAALLSWGGWLVVTAVVFSFAN
HHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
GIVHSYYTVALAPAIAAVIGIGSHLLWRNRSRPWCAVSMAGAVLVTAVLAAVLLSRNADW
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCH
MPWLRAAVAVGGVGAAVLLIVAGRLPDGVVRAAAGLAVVVCLASPAAYSVATAAAPHTGA
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
IPSVGPARGGFGGPPGLLSSPEPGEQLTALLARDAHAYRWTAAVVGSNNAAGYQLASGAP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEECCCCC
VMALGGFNGTDPAPTLEQFQRHVADGDVHYFIGSRSPLGFGRGAEQSGSRAAADIADWVQ
EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
ARYPGRTVDGVVVYDLTRAPA
HCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
GRVTLTLDAEQTQNRPNDRPRARFSVWSPRIGLGVLLAGTAVLYLWNLSASGWANAFYS
CEEEEEEECHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHEEEEEECCCCHHHHHHHH
AAAQAGSQNWTAMLFGSSDAANAITVDKTPAALWVMDLSVRVFGLNSWSILAPQALMGVA
HHHHCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHH
AVAVLYAAVRRVSGPGAALLAGAVLAVTPVAALMFRFNNPDALLVLLLVVAGYCVTRACE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
PDARRWWLIAAGVAVGFGFLAKMLQAFLVLPGFVAAYLLAGSRPVGRRILDLAGAAAAMV
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AAAGWYLLLAELWPADSRPYIGGSQHNSIVELALGYNGFGRLTGDEPGGLGNLNHDVGAG
HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
RLFGFGMGLDIAWLLPAALICLGAALLLTRRTPRTDTTRAALLSWGGWLVVTAVVFSFAN
HHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
GIVHSYYTVALAPAIAAVIGIGSHLLWRNRSRPWCAVSMAGAVLVTAVLAAVLLSRNADW
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCH
MPWLRAAVAVGGVGAAVLLIVAGRLPDGVVRAAAGLAVVVCLASPAAYSVATAAAPHTGA
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
IPSVGPARGGFGGPPGLLSSPEPGEQLTALLARDAHAYRWTAAVVGSNNAAGYQLASGAP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEECCCCC
VMALGGFNGTDPAPTLEQFQRHVADGDVHYFIGSRSPLGFGRGAEQSGSRAAADIADWVQ
EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
ARYPGRTVDGVVVYDLTRAPA
HCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]