Click here to switch to the map view.

The map label for this gene is yrdC [C]

Identifier: 108800849

GI number: 108800849

Start: 4137605

End: 4138261

Strand: Reverse

Name: yrdC [C]

Synonym: Mmcs_3885

Alternate gene names: 108800849

Gene position: 4138261-4137605 (Counterclockwise)

Preceding gene: 108800850

Following gene: 108800848

Centisome position: 72.53

GC content: 72.15

Gene sequence:

>657_bases
ATGACCCAACTGTTCGACTGCACCGACCCCGACAACCGGGCGACCGGTATCGCGGCCGCCGTCAGCGCGCTCAAAGACGG
CGGGCTGGTGGTGTTGCCCACCGACACCGTCTACGGCATCGGCGCCGACGCGTTCAACAACGAAGCCGTCGCCGCACTGC
TGGCCGCCAAGGGCCGCGGCCGGGACATGCCGGTGCCGGTGCTGGTCGGCTCGTGGCACACCATCGAGGGCCTCGTCTAC
ACGGTGCCGCACACCGCGCGGGAACTGATCCGCGCGTTCTGGCCGGGCGCGCTGAGCCTGGTGGTGCGGCAGGCGCCCTC
GCTGCCCTGGGATCTCGGCGATGCGCACGGCACGGTGATGCTGCGGATGCCGCTGCACCCGGTCGCTATCGAGCTGCTGC
GCGAGGTCGGCCCGATGGCCGTGTCGAGCGCCAACATCTCCGGCCGGCCCGCCGCGGTGTCGGCGGCCGACGCGCGCGAG
CAGCTCGGCGACCTGGTCGACGTCTATCTCGACGCCGGTCCGTCCGAACAGCAGGCGGCGTCGACGATCGTCGACCTCAG
CGGCGCCCACCCACGCATCCTGCGCACCGGGCCCGTCACCGCCGAGGCCGTCGCCGAGGTCCTCGGGGTCAACACCGAAA
GCCTGCTCACGCAGTGA

Upstream 100 bases:

>100_bases
CTGTTTTCGACGACGTGACCACCCACACCGACCTGACCGGCCGCCCGCGCTTCGTCACCGCCCGGCGTCGACCGGCCACC
ACTGCCACCGCGGAGGCGCG

Downstream 100 bases:

>100_bases
CCACAGCTGCGTGCAGTACCGTTTCGCGGTGATGGTCGAGTACCTTGCGCTCTCCGATCGCGGCGCGGGCGTGCCGCTGC
GCGAGCTCGTCCTCGTCGGC

Product: translation factor SUA5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTQLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRGRDMPVPVLVGSWHTIEGLVY
TVPHTARELIRAFWPGALSLVVRQAPSLPWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGRPAAVSAADARE
QLGDLVDVYLDAGPSEQQAASTIVDLSGAHPRILRTGPVTAEAVAEVLGVNTESLLTQ

Sequences:

>Translated_218_residues
MTQLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRGRDMPVPVLVGSWHTIEGLVY
TVPHTARELIRAFWPGALSLVVRQAPSLPWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGRPAAVSAADARE
QLGDLVDVYLDAGPSEQQAASTIVDLSGAHPRILRTGPVTAEAVAEVLGVNTESLLTQ
>Mature_217_residues
TQLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRGRDMPVPVLVGSWHTIEGLVYT
VPHTARELIRAFWPGALSLVVRQAPSLPWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGRPAAVSAADAREQ
LGDLVDVYLDAGPSEQQAASTIVDLSGAHPRILRTGPVTAEAVAEVLGVNTESLLTQ

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=150, Percent_Identity=28, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17537239, Length=200, Percent_Identity=30.5, Blast_Score=78, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6321269, Length=219, Percent_Identity=30.5936073059361, Blast_Score=89, Evalue=7e-19,
Organism=Drosophila melanogaster, GI78707274, Length=187, Percent_Identity=31.0160427807487, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22714; Mature: 22583

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRG
CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHCCCC
RDMPVPVLVGSWHTIEGLVYTVPHTARELIRAFWPGALSLVVRQAPSLPWDLGDAHGTVM
CCCCCEEEECCCEEECCEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEE
LRMPLHPVAIELLREVGPMAVSSANISGRPAAVSAADAREQLGDLVDVYLDAGPSEQQAA
EEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
STIVDLSGAHPRILRTGPVTAEAVAEVLGVNTESLLTQ
HHHHCCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure 
TQLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRG
CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHCCCC
RDMPVPVLVGSWHTIEGLVYTVPHTARELIRAFWPGALSLVVRQAPSLPWDLGDAHGTVM
CCCCCEEEECCCEEECCEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEE
LRMPLHPVAIELLREVGPMAVSSANISGRPAAVSAADAREQLGDLVDVYLDAGPSEQQAA
EEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
STIVDLSGAHPRILRTGPVTAEAVAEVLGVNTESLLTQ
HHHHCCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]