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The map label for this gene is 108800339

Identifier: 108800339

GI number: 108800339

Start: 3575425

End: 3576006

Strand: Reverse

Name: 108800339

Synonym: Mmcs_3373

Alternate gene names: NA

Gene position: 3576006-3575425 (Counterclockwise)

Preceding gene: 108800342

Following gene: 108800338

Centisome position: 62.68

GC content: 69.24

Gene sequence:

>582_bases
ATGGTGTCAATCCGTAAGGACAGTCCGCGATCGGTGGAGGAGCGCATCCTCGACGCCGCCGCGGAGTGTGTCGTGGCCTA
CGGGGTCAACCGGGTGACGCTGGCGGAGATCGCCCGCCGCGCCCGGGTCAGCCGGCCGACCATCTACCGCCGCTGGCGCG
ACACCGACGCGGTGCTCGCCGCCCTGCTGACCGCGCGGATCGCCGGTGTGCTCGACGCGGTACCCGGCAGCGCGGTCGGC
CGCGAGCCGTTGGTCGACCGGATCGTGCGGGTGGGGGATCGGCTGCGCAACGACGAGATCGTGATCGCGGTGCTGCACAG
CGCGCCGGAGTTGGCGATGGTCTACATCACCGAACGGCTAGGCACCAGCCAGCAGATCCTCATCGACGCGCTGGCCGGTG
AGATCAAACTCGCCCAGGACGAGGGCAGCGTCCGCTCGGGTGAACCCCGCCAACTCGCCGCGATGTGCCTGCTGATCACC
CAGTCGACCATCCAATCCGCACAGATGGTCGCCCCGCTGCTCGACGAGGAGGCACTGTCGGTGGAGCTGGCGCGCTCGTT
GAACGGATACCTGCGGCCATGA

Upstream 100 bases:

>100_bases
GGTTTGGCGGCATCCGGGTCACCCCAGGCGTTCCACTTCATCGGGGGGAGAAGGGCTGCTGGGTGCTCCGATCCGGCGGA
CATGCGTTACAGTATTACAC

Downstream 100 bases:

>100_bases
CCTCGTCACGGAGTCCGGTCCTGAACGCGTCCCGCCGCGCCACCGAACTGAGCGCCCTCGCCGACGGTGCCCCGCTCGAC
GTCGTGGTGATCGGTGGCGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MVSIRKDSPRSVEERILDAAAECVVAYGVNRVTLAEIARRARVSRPTIYRRWRDTDAVLAALLTARIAGVLDAVPGSAVG
REPLVDRIVRVGDRLRNDEIVIAVLHSAPELAMVYITERLGTSQQILIDALAGEIKLAQDEGSVRSGEPRQLAAMCLLIT
QSTIQSAQMVAPLLDEEALSVELARSLNGYLRP

Sequences:

>Translated_193_residues
MVSIRKDSPRSVEERILDAAAECVVAYGVNRVTLAEIARRARVSRPTIYRRWRDTDAVLAALLTARIAGVLDAVPGSAVG
REPLVDRIVRVGDRLRNDEIVIAVLHSAPELAMVYITERLGTSQQILIDALAGEIKLAQDEGSVRSGEPRQLAAMCLLIT
QSTIQSAQMVAPLLDEEALSVELARSLNGYLRP
>Mature_193_residues
MVSIRKDSPRSVEERILDAAAECVVAYGVNRVTLAEIARRARVSRPTIYRRWRDTDAVLAALLTARIAGVLDAVPGSAVG
REPLVDRIVRVGDRLRNDEIVIAVLHSAPELAMVYITERLGTSQQILIDALAGEIKLAQDEGSVRSGEPRQLAAMCLLIT
QSTIQSAQMVAPLLDEEALSVELARSLNGYLRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21037; Mature: 21037

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSIRKDSPRSVEERILDAAAECVVAYGVNRVTLAEIARRARVSRPTIYRRWRDTDAVLA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCHHHHHH
ALLTARIAGVLDAVPGSAVGREPLVDRIVRVGDRLRNDEIVIAVLHSAPELAMVYITERL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
GTSQQILIDALAGEIKLAQDEGSVRSGEPRQLAAMCLLITQSTIQSAQMVAPLLDEEALS
CCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELARSLNGYLRP
HHHHHHHCCCCCC
>Mature Secondary Structure
MVSIRKDSPRSVEERILDAAAECVVAYGVNRVTLAEIARRARVSRPTIYRRWRDTDAVLA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCHHHHHH
ALLTARIAGVLDAVPGSAVGREPLVDRIVRVGDRLRNDEIVIAVLHSAPELAMVYITERL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
GTSQQILIDALAGEIKLAQDEGSVRSGEPRQLAAMCLLITQSTIQSAQMVAPLLDEEALS
CCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELARSLNGYLRP
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]