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The map label for this gene is ycdM [C]

Identifier: 108800292

GI number: 108800292

Start: 3523656

End: 3524516

Strand: Reverse

Name: ycdM [C]

Synonym: Mmcs_3326

Alternate gene names: 108800292

Gene position: 3524516-3523656 (Counterclockwise)

Preceding gene: 108800293

Following gene: 108800285

Centisome position: 61.77

GC content: 68.06

Gene sequence:

>861_bases
ATGAAGTACTACGTCAGCCCGGCGTTCGTCGACACCAGCGAGATTCTCGACATCGCCCGCGCCGCAGACGAACTCGGATA
CGACGGTCTCGGCATCCCGGACCACGTGGTGAACCTCGAGACACTCGAGACGCCGTATCCGTACACCCGCGACGGAGAGC
GGCGCTGGCAGCCGTTCACGCACTGGCCGGACCCGTGGGTGCTCGTCGGCGCCCTCGCGCAGGTCACCTCGCGGTTGAAG
TTCGTCACCACGGTGTACGTACCGGCGATGCGCGACCCCTATTCGGCGGCTAAGGCGATCGGCACCGCGGCCTACCTCGC
CGGCGGCCGGGTCGAACTCGGTGTCGGGGTCGGCTGGTGCGAGGACGAATTCCGGTTGATGGGGCAGCGATTCGACCGTC
GCGGCAGGCGCACCGACGAGATGCTCGACCTGTTCCGGGCATTGTGGCAGCCGGGCTGGACCGAGTTCGACGGCGAGTTC
TACCCCACGCCGCGCCTGGAGATGGAGCCCACCCCGCCGCACATCCCGATCTACGTCGGCGGCCTCAGCGATGTCGCGTT
CCGCCGTGCCGCGCGCAACGACGGCTGGATCGGCGATCTGATCACCACCGACCGGGCGATCGCCGTGGCGCATCGGCTTC
ACGAACTACGCACCGCGGCAGGGCAATCCGTGGACGACTTCACGATCCTCACGCCGCTGACCGACGCGCTGGTGCGCGCG
GACTACGACCGTGCCGAGGCCGCGGGCATCACCCACATCCTGACCATGCCGTGGATGTTCTACACCGGTGCCGACGCGAC
GCTGGCCGAGAAGATCGACGGGATGAAGCGGTTCCGCAAGGACCTCGGGCTGGACCGCTAG

Upstream 100 bases:

>100_bases
CTGGGACAACGATGACGGCGGCGAATTCCTCGACAACTACCTGCGGGTGACACGGCGTGCGAAGACCGTGGTGCGCAAGG
TGTTCGGTGGCTGACCCCGG

Downstream 100 bases:

>100_bases
CCGAGTTCGGTCTCGCCCCGGTCGCCGTCCGGCTCCTCGGTGGGCGCGGGTGCGGAGGTCGCGCGTCGCCCGGCGATGTA
CTCGAGGATCCCGGTGATGT

Product: luciferase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKYYVSPAFVDTSEILDIARAADELGYDGLGIPDHVVNLETLETPYPYTRDGERRWQPFTHWPDPWVLVGALAQVTSRLK
FVTTVYVPAMRDPYSAAKAIGTAAYLAGGRVELGVGVGWCEDEFRLMGQRFDRRGRRTDEMLDLFRALWQPGWTEFDGEF
YPTPRLEMEPTPPHIPIYVGGLSDVAFRRAARNDGWIGDLITTDRAIAVAHRLHELRTAAGQSVDDFTILTPLTDALVRA
DYDRAEAAGITHILTMPWMFYTGADATLAEKIDGMKRFRKDLGLDR

Sequences:

>Translated_286_residues
MKYYVSPAFVDTSEILDIARAADELGYDGLGIPDHVVNLETLETPYPYTRDGERRWQPFTHWPDPWVLVGALAQVTSRLK
FVTTVYVPAMRDPYSAAKAIGTAAYLAGGRVELGVGVGWCEDEFRLMGQRFDRRGRRTDEMLDLFRALWQPGWTEFDGEF
YPTPRLEMEPTPPHIPIYVGGLSDVAFRRAARNDGWIGDLITTDRAIAVAHRLHELRTAAGQSVDDFTILTPLTDALVRA
DYDRAEAAGITHILTMPWMFYTGADATLAEKIDGMKRFRKDLGLDR
>Mature_286_residues
MKYYVSPAFVDTSEILDIARAADELGYDGLGIPDHVVNLETLETPYPYTRDGERRWQPFTHWPDPWVLVGALAQVTSRLK
FVTTVYVPAMRDPYSAAKAIGTAAYLAGGRVELGVGVGWCEDEFRLMGQRFDRRGRRTDEMLDLFRALWQPGWTEFDGEF
YPTPRLEMEPTPPHIPIYVGGLSDVAFRRAARNDGWIGDLITTDRAIAVAHRLHELRTAAGQSVDDFTILTPLTDALVRA
DYDRAEAAGITHILTMPWMFYTGADATLAEKIDGMKRFRKDLGLDR

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 32260; Mature: 32260

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYYVSPAFVDTSEILDIARAADELGYDGLGIPDHVVNLETLETPYPYTRDGERRWQPFT
CCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEHHHCCCCCCCCCCCCCCCCCCC
HWPDPWVLVGALAQVTSRLKFVTTVYVPAMRDPYSAAKAIGTAAYLAGGRVELGVGVGWC
CCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
EDEFRLMGQRFDRRGRRTDEMLDLFRALWQPGWTEFDGEFYPTPRLEMEPTPPHIPIYVG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
GLSDVAFRRAARNDGWIGDLITTDRAIAVAHRLHELRTAAGQSVDDFTILTPLTDALVRA
CHHHHHHHHHHCCCCCEEHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHC
DYDRAEAAGITHILTMPWMFYTGADATLAEKIDGMKRFRKDLGLDR
CCCHHHHHCHHHHHHHCHHEECCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYYVSPAFVDTSEILDIARAADELGYDGLGIPDHVVNLETLETPYPYTRDGERRWQPFT
CCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEHHHCCCCCCCCCCCCCCCCCCC
HWPDPWVLVGALAQVTSRLKFVTTVYVPAMRDPYSAAKAIGTAAYLAGGRVELGVGVGWC
CCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
EDEFRLMGQRFDRRGRRTDEMLDLFRALWQPGWTEFDGEFYPTPRLEMEPTPPHIPIYVG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
GLSDVAFRRAARNDGWIGDLITTDRAIAVAHRLHELRTAAGQSVDDFTILTPLTDALVRA
CHHHHHHHHHHCCCCCEEHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHC
DYDRAEAAGITHILTMPWMFYTGADATLAEKIDGMKRFRKDLGLDR
CCCHHHHHCHHHHHHHCHHEECCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]