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The map label for this gene is ybdB [C]

Identifier: 108800188

GI number: 108800188

Start: 3413807

End: 3414244

Strand: Reverse

Name: ybdB [C]

Synonym: Mmcs_3222

Alternate gene names: 108800188

Gene position: 3414244-3413807 (Counterclockwise)

Preceding gene: 108800189

Following gene: 108800187

Centisome position: 59.84

GC content: 60.73

Gene sequence:

>438_bases
GTGCAATTCACCACGTTCAACGAACAGGTCGCTGAGCAACTAAAGAGCGCAGCAGAAACCACGGGCGGGTTGGCCGGTTA
CCTCGGCTTCCGTCACACCGAATTCACTGCGGGACGGCTCGTCGCGGAGATGGACGCACGCGACGACCTGAAGACGCCTT
TCGGGAACCTGCATGGGGGCTGCTTATCGGCCATGGTCGACCACTGCCTCGGAGTGGTGTTTTATCCCGTGATTCCACTG
GGATCTTGGGTCGCGACAACGGAGTTCAAACTGAATCTGCTTCGTCCGGTCTCTAGCGGCACCTGTGTAGCCACAGCCGA
GATCATCTCGCTGGGCAGAACCAGCGGTGTGGCGCGTATCGACATCTGCAACGACGGCAGAGCGGTGTGTGCGGCCCAGG
GAACCGTCACCGTCGTCGCACCGAAGACGAGCTCCTGA

Upstream 100 bases:

>100_bases
GTCGAGGTTTCTCCTTCCGGCGATCCTGGCGGGTGACCACGCTCGACCGATGTGACATCTATGGCGTAATGTCTCGACGG
CAGATGAGGTAGGAGGGCCT

Downstream 100 bases:

>100_bases
TGTCGGCAAAGAGAACAGGCGATTCGTCGGCTCCTGTGGTCGAGCGCGTGCCCACGGCGGACGGGCTGACGCTGGCGGTC
GACCTCTACCGCTGTGATGC

Product: phenylacetic acid degradation-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MQFTTFNEQVAEQLKSAAETTGGLAGYLGFRHTEFTAGRLVAEMDARDDLKTPFGNLHGGCLSAMVDHCLGVVFYPVIPL
GSWVATTEFKLNLLRPVSSGTCVATAEIISLGRTSGVARIDICNDGRAVCAAQGTVTVVAPKTSS

Sequences:

>Translated_145_residues
MQFTTFNEQVAEQLKSAAETTGGLAGYLGFRHTEFTAGRLVAEMDARDDLKTPFGNLHGGCLSAMVDHCLGVVFYPVIPL
GSWVATTEFKLNLLRPVSSGTCVATAEIISLGRTSGVARIDICNDGRAVCAAQGTVTVVAPKTSS
>Mature_145_residues
MQFTTFNEQVAEQLKSAAETTGGLAGYLGFRHTEFTAGRLVAEMDARDDLKTPFGNLHGGCLSAMVDHCLGVVFYPVIPL
GSWVATTEFKLNLLRPVSSGTCVATAEIISLGRTSGVARIDICNDGRAVCAAQGTVTVVAPKTSS

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15255; Mature: 15255

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFTTFNEQVAEQLKSAAETTGGLAGYLGFRHTEFTAGRLVAEMDARDDLKTPFGNLHGG
CCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHEECCCCCCCCCCCCCCCHH
CLSAMVDHCLGVVFYPVIPLGSWVATTEFKLNLLRPVSSGTCVATAEIISLGRTSGVARI
HHHHHHHHHHHHHHHHHHCCCCEEEEHEEEEEEECCCCCCCEEHHHHHHHHCCCCCEEEE
DICNDGRAVCAAQGTVTVVAPKTSS
EEECCCCEEEEECCEEEEEECCCCC
>Mature Secondary Structure
MQFTTFNEQVAEQLKSAAETTGGLAGYLGFRHTEFTAGRLVAEMDARDDLKTPFGNLHGG
CCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHEECCCCCCCCCCCCCCCHH
CLSAMVDHCLGVVFYPVIPLGSWVATTEFKLNLLRPVSSGTCVATAEIISLGRTSGVARI
HHHHHHHHHHHHHHHHHHCCCCEEEEHEEEEEEECCCCCCCEEHHHHHHHHCCCCCEEEE
DICNDGRAVCAAQGTVTVVAPKTSS
EEECCCCEEEEECCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA