Click here to switch to the map view.

The map label for this gene is adiY [C]

Identifier: 108800182

GI number: 108800182

Start: 3408153

End: 3409157

Strand: Reverse

Name: adiY [C]

Synonym: Mmcs_3216

Alternate gene names: 108800182

Gene position: 3409157-3408153 (Counterclockwise)

Preceding gene: 108800186

Following gene: 108800181

Centisome position: 59.75

GC content: 59.7

Gene sequence:

>1005_bases
GTGAAACTCGACGACTCGGGTATGCCAGCGCTGGCTTTCCTGCAGATGCTGGACAGTGAGGCGCTGGGGCATGACGCCAG
CATTGCGCTCCGCAGCATCATGGTTCGCGAGCACGTTACCGAGTCGATGTTGGTGGGTCGCGACGCGCAGGTCCCCTTAC
GGTGGTTCAGGGAGATATATTCCGATTTCGATTGTGATCAGGGAACCCGTCTGGGTTTCGCGTTCGCTGAACACGCCAAA
CTGACGTCCTTTGGGGCACTCAGTGTTCCCTTGGTCAGCGCGGGCTCGGTAGCCGAGGTTGTCGAGTTGCTTGCTTATCT
GCCGGTGATCACCACAGCCCTCAGCCCGACGTTCCATTCGACGGAACGCGGCCTCACGATCGGGCTCACCGGTCGCACCG
GTGACGCGGGCCTGAACTGCCTGGCCGTCACCTACGGTGGGCTGGCGCTGTTGCGTCTGCTCGACATGCTCGCGGGTGCC
GTACCGAATATTGAACTGCATTTAAGTCATTCAGCGCCGGAGTCGTGGGTTCTTCATGACGAAGTGTTGGCGGGTCGGAT
CTTCTTCGACGCCCCCAGCTCGTTCGTCCACGTTCCCGCGGCTTCGCTCGAGGAGGTCTGTCGATTCTCCGATCCTGTGG
CGTACCGGATTGCCGTCACCGATTTGCAGCGAACTCTCGATCAACGACGTGACACGTCGGTCTCCGAAAAAGTAAGGGAC
CTGCTCGAAAAAGATCCCGGAAAAACGAACATCAGCCGGACGGCGGGCGAGCTTTCGATATCCCCGAGCACGTTGAAGCG
GCGCCTCCGCGAAGAGGGGACCACCTTTCGCGAATTGCGTCAGTCGTTCTTGCGGGAGCGAGCAATTCTGCGACTTCTCG
ACAGATCGTTGTCTGTAAGCGAGATCGCGGCAGAACTCGGGTACGCGGAGCTCACGAACTTCACACATGCCTTCAAACGG
TGGACCGGTCGTTCACCGCGCCACTTCAGAAAAACGCGCGACTGA

Upstream 100 bases:

>100_bases
AATTTGGAACTCCTCTATTTAGCGTTGTCGCGCGTGACCAGCGTCGCTAGGCTCGCAGGAGTCAAAAAGTTGTGTTTTTA
GCTCACGCGCAGGGAGGCAC

Downstream 100 bases:

>100_bases
GGGCTATAGATCCGCCCCGGCGTGTGCCGGGCGACCATCGGAACCAGCGGGCTTCACGATCGGCCTCATCTGTCACCTGG
ACATCGTCGAGAAACGACAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKLDDSGMPALAFLQMLDSEALGHDASIALRSIMVREHVTESMLVGRDAQVPLRWFREIYSDFDCDQGTRLGFAFAEHAK
LTSFGALSVPLVSAGSVAEVVELLAYLPVITTALSPTFHSTERGLTIGLTGRTGDAGLNCLAVTYGGLALLRLLDMLAGA
VPNIELHLSHSAPESWVLHDEVLAGRIFFDAPSSFVHVPAASLEEVCRFSDPVAYRIAVTDLQRTLDQRRDTSVSEKVRD
LLEKDPGKTNISRTAGELSISPSTLKRRLREEGTTFRELRQSFLRERAILRLLDRSLSVSEIAAELGYAELTNFTHAFKR
WTGRSPRHFRKTRD

Sequences:

>Translated_334_residues
MKLDDSGMPALAFLQMLDSEALGHDASIALRSIMVREHVTESMLVGRDAQVPLRWFREIYSDFDCDQGTRLGFAFAEHAK
LTSFGALSVPLVSAGSVAEVVELLAYLPVITTALSPTFHSTERGLTIGLTGRTGDAGLNCLAVTYGGLALLRLLDMLAGA
VPNIELHLSHSAPESWVLHDEVLAGRIFFDAPSSFVHVPAASLEEVCRFSDPVAYRIAVTDLQRTLDQRRDTSVSEKVRD
LLEKDPGKTNISRTAGELSISPSTLKRRLREEGTTFRELRQSFLRERAILRLLDRSLSVSEIAAELGYAELTNFTHAFKR
WTGRSPRHFRKTRD
>Mature_334_residues
MKLDDSGMPALAFLQMLDSEALGHDASIALRSIMVREHVTESMLVGRDAQVPLRWFREIYSDFDCDQGTRLGFAFAEHAK
LTSFGALSVPLVSAGSVAEVVELLAYLPVITTALSPTFHSTERGLTIGLTGRTGDAGLNCLAVTYGGLALLRLLDMLAGA
VPNIELHLSHSAPESWVLHDEVLAGRIFFDAPSSFVHVPAASLEEVCRFSDPVAYRIAVTDLQRTLDQRRDTSVSEKVRD
LLEKDPGKTNISRTAGELSISPSTLKRRLREEGTTFRELRQSFLRERAILRLLDRSLSVSEIAAELGYAELTNFTHAFKR
WTGRSPRHFRKTRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36997; Mature: 36997

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDDSGMPALAFLQMLDSEALGHDASIALRSIMVREHVTESMLVGRDAQVPLRWFREIY
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
SDFDCDQGTRLGFAFAEHAKLTSFGALSVPLVSAGSVAEVVELLAYLPVITTALSPTFHS
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
TERGLTIGLTGRTGDAGLNCLAVTYGGLALLRLLDMLAGAVPNIELHLSHSAPESWVLHD
CCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHH
EVLAGRIFFDAPSSFVHVPAASLEEVCRFSDPVAYRIAVTDLQRTLDQRRDTSVSEKVRD
HHHHCEEEECCCCCEEECCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHH
LLEKDPGKTNISRTAGELSISPSTLKRRLREEGTTFRELRQSFLRERAILRLLDRSLSVS
HHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
EIAAELGYAELTNFTHAFKRWTGRSPRHFRKTRD
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MKLDDSGMPALAFLQMLDSEALGHDASIALRSIMVREHVTESMLVGRDAQVPLRWFREIY
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
SDFDCDQGTRLGFAFAEHAKLTSFGALSVPLVSAGSVAEVVELLAYLPVITTALSPTFHS
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
TERGLTIGLTGRTGDAGLNCLAVTYGGLALLRLLDMLAGAVPNIELHLSHSAPESWVLHD
CCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHH
EVLAGRIFFDAPSSFVHVPAASLEEVCRFSDPVAYRIAVTDLQRTLDQRRDTSVSEKVRD
HHHHCEEEECCCCCEEECCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHH
LLEKDPGKTNISRTAGELSISPSTLKRRLREEGTTFRELRQSFLRERAILRLLDRSLSVS
HHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
EIAAELGYAELTNFTHAFKRWTGRSPRHFRKTRD
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]