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The map label for this gene is p49 [H]

Identifier: 108799992

GI number: 108799992

Start: 3197153

End: 3198745

Strand: Reverse

Name: p49 [H]

Synonym: Mmcs_3026

Alternate gene names: 108799992

Gene position: 3198745-3197153 (Counterclockwise)

Preceding gene: 108799993

Following gene: 108799990

Centisome position: 56.06

GC content: 71.88

Gene sequence:

>1593_bases
GTGACGCCGGCTAGCGCCGACGCGGTCGTCATCGGCGCGGGGCACAACGGTCTGGTCGCCGCGGCGCTGATGGCCGACGC
CGGCTGGGATGTCGTCGTGCTCGAGGCGCAGCCAGAACCCGGAGGGGCCGTGCGCAGCGCCGAGCGCATCCCGGGCTACA
CCAGCGATCTCTACAGCGCGTTCTATCCGCTGTCGGTCGCGTCGCCGGTGCTGGCGGGCCTGCACCTGGAAGACCACGGT
CTGCGATGGACGCACGCGCCGGCCGTCGTCGGACACCCACGCTCGGCCGCCGACGAGGACGCGCCGGTCATCTACCGCGA
CATCGCCCGCACCGCCGAGGAACTCGCGCGCCACCACCCGGCCGACGGGGATAACTGGATGCGGTTGTTCGACCTCTGGC
AGCAGGTCAAGGATCCGCTGCTGAGCAGCCTCTTCTCACCGTTTCCGCCGGTGCGCGGGGCGGCCGGGCTGCTGCGCACG
CTGGGAGCCGCCGAGGCGCTGCGCCTGGTGCACCGGCTGGTGCTGCCGGTCGGTGAGATGGCCCGGCAAATGTTCGCCGG
CGACGCCGCCCGGCTGCTGTTGCTCGGCAACGCCCTGCACGCCGACGTGCCTGTCGACGCGCCCGGCAGCGGTGTCATGG
GCTTCATGCTGATCATGATGGCGCAGGACGGGGGATGGCCGGTCCCCGTCGGCGGCGCCGGACAATTCACCGCCGCCCTG
GTCGACCGGGCCCGATCCGCCGGGGCGCAGATCCACTGCGGACAGCAGGTCACCGGCATCGAGGTGCGCGGCGGCCGGGC
CGTCGGCGTGCGCACCGCGGACGGCCGAACGGTCGCCGCGCGGCGCGCGGTGGTGGCCGACGTGTCGGCGCCCGCGCTGT
ACCGCGAGCTGCTGCCGTCGACGGCCGTACCACCTCGAGTTCTCGAGGATTTCGAGCACTTCACCTGGGACACCCCGGTC
CTGAAGGTCAACTACGCCCTGGACGCGCCGATCCCGTGGCGGTCGAAGAACCTCAACGAGGTCGGCACGGTGCACCTCGG
CGCCGACGCGGACGGGCTGGTCCGGTGGATGGCCGACCTCAACACCCGCACGGTCCCCGAGCATCCCTTCATGCTGTTCG
GCCAGATGACCACCGCCGATCCGACGCGGTCACCGGAAGGCACCGAAAGCGCTTGGGCCTACACGCATCTGCCGCGCGAC
GTCACCGACGACGCCTCGGCGGACCAATTGTCCGAGGCGGTCGACCGGGTGCTCGAGGAGCACGCGCCCGGATTCACCGA
TCAGGTCGTCGGGAAGTTCATCCAGCGTCCCTCGGAGCTGACGGCTTCCGACGCGAACCTCGTGGGCGGCGCCGTCAACG
GCGGCACCGCCCAATTGCAGCAGCAGCTCATCTTCCGCCCGACCCCGGGGTTCGGCCGTGCCGAGACGCCGATCGAAGGG
CTGTTTCTCGGCAGCGCGGGAGCCCACCCCGGCGGCGGGGTGCACGGTGTCTGCGGGCGCAACGCCGCCGCGGCGGCGCT
CGCGAGCGACGGGCTGACCGGCTGGCCGCGGCGAAAGATCAATCAGCTGGTGATGTCGCTGCTCGTCCGTTAG

Upstream 100 bases:

>100_bases
GGCAAGCTGATGCCCGAGCGGATCTCCGACGCCGCGGTGTGGCCGCGCAACAACGAAACACTGCGGCGTCTCGCCTTCCT
CGCCGAGCGTCGCGACGACC

Downstream 100 bases:

>100_bases
TCGGAAGCTCGACCGCCCGGCGGACCGCGGTGTCGTTGCGTCGGCCGACCAGGTACCAGGTGTGGATCAGGCCCTTGCCC
TTGACGTCGACGTCGCCGCG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 529

Protein sequence:

>530_residues
MTPASADAVVIGAGHNGLVAAALMADAGWDVVVLEAQPEPGGAVRSAERIPGYTSDLYSAFYPLSVASPVLAGLHLEDHG
LRWTHAPAVVGHPRSAADEDAPVIYRDIARTAEELARHHPADGDNWMRLFDLWQQVKDPLLSSLFSPFPPVRGAAGLLRT
LGAAEALRLVHRLVLPVGEMARQMFAGDAARLLLLGNALHADVPVDAPGSGVMGFMLIMMAQDGGWPVPVGGAGQFTAAL
VDRARSAGAQIHCGQQVTGIEVRGGRAVGVRTADGRTVAARRAVVADVSAPALYRELLPSTAVPPRVLEDFEHFTWDTPV
LKVNYALDAPIPWRSKNLNEVGTVHLGADADGLVRWMADLNTRTVPEHPFMLFGQMTTADPTRSPEGTESAWAYTHLPRD
VTDDASADQLSEAVDRVLEEHAPGFTDQVVGKFIQRPSELTASDANLVGGAVNGGTAQLQQQLIFRPTPGFGRAETPIEG
LFLGSAGAHPGGGVHGVCGRNAAAAALASDGLTGWPRRKINQLVMSLLVR

Sequences:

>Translated_530_residues
MTPASADAVVIGAGHNGLVAAALMADAGWDVVVLEAQPEPGGAVRSAERIPGYTSDLYSAFYPLSVASPVLAGLHLEDHG
LRWTHAPAVVGHPRSAADEDAPVIYRDIARTAEELARHHPADGDNWMRLFDLWQQVKDPLLSSLFSPFPPVRGAAGLLRT
LGAAEALRLVHRLVLPVGEMARQMFAGDAARLLLLGNALHADVPVDAPGSGVMGFMLIMMAQDGGWPVPVGGAGQFTAAL
VDRARSAGAQIHCGQQVTGIEVRGGRAVGVRTADGRTVAARRAVVADVSAPALYRELLPSTAVPPRVLEDFEHFTWDTPV
LKVNYALDAPIPWRSKNLNEVGTVHLGADADGLVRWMADLNTRTVPEHPFMLFGQMTTADPTRSPEGTESAWAYTHLPRD
VTDDASADQLSEAVDRVLEEHAPGFTDQVVGKFIQRPSELTASDANLVGGAVNGGTAQLQQQLIFRPTPGFGRAETPIEG
LFLGSAGAHPGGGVHGVCGRNAAAAALASDGLTGWPRRKINQLVMSLLVR
>Mature_529_residues
TPASADAVVIGAGHNGLVAAALMADAGWDVVVLEAQPEPGGAVRSAERIPGYTSDLYSAFYPLSVASPVLAGLHLEDHGL
RWTHAPAVVGHPRSAADEDAPVIYRDIARTAEELARHHPADGDNWMRLFDLWQQVKDPLLSSLFSPFPPVRGAAGLLRTL
GAAEALRLVHRLVLPVGEMARQMFAGDAARLLLLGNALHADVPVDAPGSGVMGFMLIMMAQDGGWPVPVGGAGQFTAALV
DRARSAGAQIHCGQQVTGIEVRGGRAVGVRTADGRTVAARRAVVADVSAPALYRELLPSTAVPPRVLEDFEHFTWDTPVL
KVNYALDAPIPWRSKNLNEVGTVHLGADADGLVRWMADLNTRTVPEHPFMLFGQMTTADPTRSPEGTESAWAYTHLPRDV
TDDASADQLSEAVDRVLEEHAPGFTDQVVGKFIQRPSELTASDANLVGGAVNGGTAQLQQQLIFRPTPGFGRAETPIEGL
FLGSAGAHPGGGVHGVCGRNAAAAALASDGLTGWPRRKINQLVMSLLVR

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=549, Percent_Identity=28.9617486338798, Blast_Score=159, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI17540238, Length=564, Percent_Identity=24.645390070922, Blast_Score=152, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56031; Mature: 55900

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPASADAVVIGAGHNGLVAAALMADAGWDVVVLEAQPEPGGAVRSAERIPGYTSDLYSA
CCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHCCHHHCCCCHHHHHHH
FYPLSVASPVLAGLHLEDHGLRWTHAPAVVGHPRSAADEDAPVIYRDIARTAEELARHHP
HCCHHHHHHHHHCCEECCCCCEEEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
ADGDNWMRLFDLWQQVKDPLLSSLFSPFPPVRGAAGLLRTLGAAEALRLVHRLVLPVGEM
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
ARQMFAGDAARLLLLGNALHADVPVDAPGSGVMGFMLIMMAQDGGWPVPVGGAGQFTAAL
HHHHHHCCHHEEEEECCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
VDRARSAGAQIHCGQQVTGIEVRGGRAVGVRTADGRTVAARRAVVADVSAPALYRELLPS
HHHHHHCCCEEECCCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCC
TAVPPRVLEDFEHFTWDTPVLKVNYALDAPIPWRSKNLNEVGTVHLGADADGLVRWMADL
CCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHC
NTRTVPEHPFMLFGQMTTADPTRSPEGTESAWAYTHLPRDVTDDASADQLSEAVDRVLEE
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
HAPGFTDQVVGKFIQRPSELTASDANLVGGAVNGGTAQLQQQLIFRPTPGFGRAETPIEG
HCCCCHHHHHHHHHCCCHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCE
LFLGSAGAHPGGGVHGVCGRNAAAAALASDGLTGWPRRKINQLVMSLLVR
EEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPASADAVVIGAGHNGLVAAALMADAGWDVVVLEAQPEPGGAVRSAERIPGYTSDLYSA
CCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHCCHHHCCCCHHHHHHH
FYPLSVASPVLAGLHLEDHGLRWTHAPAVVGHPRSAADEDAPVIYRDIARTAEELARHHP
HCCHHHHHHHHHCCEECCCCCEEEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
ADGDNWMRLFDLWQQVKDPLLSSLFSPFPPVRGAAGLLRTLGAAEALRLVHRLVLPVGEM
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
ARQMFAGDAARLLLLGNALHADVPVDAPGSGVMGFMLIMMAQDGGWPVPVGGAGQFTAAL
HHHHHHCCHHEEEEECCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
VDRARSAGAQIHCGQQVTGIEVRGGRAVGVRTADGRTVAARRAVVADVSAPALYRELLPS
HHHHHHCCCEEECCCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCC
TAVPPRVLEDFEHFTWDTPVLKVNYALDAPIPWRSKNLNEVGTVHLGADADGLVRWMADL
CCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHC
NTRTVPEHPFMLFGQMTTADPTRSPEGTESAWAYTHLPRDVTDDASADQLSEAVDRVLEE
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
HAPGFTDQVVGKFIQRPSELTASDANLVGGAVNGGTAQLQQQLIFRPTPGFGRAETPIEG
HCCCCHHHHHHHHHCCCHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCE
LFLGSAGAHPGGGVHGVCGRNAAAAALASDGLTGWPRRKINQLVMSLLVR
EEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]