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The map label for this gene is ydeS [H]

Identifier: 108799619

GI number: 108799619

Start: 2804545

End: 2805147

Strand: Reverse

Name: ydeS [H]

Synonym: Mmcs_2652

Alternate gene names: 108799619

Gene position: 2805147-2804545 (Counterclockwise)

Preceding gene: 108799620

Following gene: 108799618

Centisome position: 49.17

GC content: 67.99

Gene sequence:

>603_bases
ATGACGAAATCCGACGGCGTCGACACCGCGGCACGTCCGCGCGGTGCGGTGGTGACCGGTTCCATCCTGTCCGCCGCCCG
TGACCTGATCGATCAGCACGGTCTGGAATCGCTCACCGCCGAGGCGGTGGCGGCGCACGCGGGCGTGGGCAAGACCACGG
TGTACCGGCGGTGGCCGAATGTCTGGGCGTTGGTGGTCGACGCGTTCCTGGAGGATGTCAGTGCCGTTGCGCCGATCACC
GAGGGGGACACCGTCCGGGAGAGTTTCCGGACCTCCATGCGGTCGCTGATCAAGGCCTATCGCGGGCCGACGGGCACGCT
GCTGCGCGCGGTCATCGGGCGAGCACAGGTCGACGACGTACTGCGCGAGGAAGTCCGCAACCGGTGGGTCGAGCCACGTC
GCGAGTCCGCGCGCGAACTCGTTCGGCGCGGCATGGACCACGGTGAGTTGAGGAGCGACCTCGACATCGACGTGGTGCTC
GACACGCTGTACGGCCCGATCTACCACCGCATCCTCGTGCCCTACCGCGACGCCGACCTCACCGAGGGGTTCGTCGACCG
GATCGTCGACCACGTGTTCACCGGAATCGAACGAGCTCGGTGA

Upstream 100 bases:

>100_bases
TCGCATTCCTGGCCTCCGATCTGGCGAGCTACGCCGTCGGCGCGGTGTGGATGCTCGACGGGGGCATGAGCGTTGCGGTG
CCGAACTGATCGAGGGGACG

Downstream 100 bases:

>100_bases
GGCTCGTGGCGACCGGTGCGCACTCGCAATGATTGCGATATCGACGACGTATATGGGTGAGCCGCCAGGGTATGTGGTAG
GTCAGATGGATCATCTACGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTKSDGVDTAARPRGAVVTGSILSAARDLIDQHGLESLTAEAVAAHAGVGKTTVYRRWPNVWALVVDAFLEDVSAVAPIT
EGDTVRESFRTSMRSLIKAYRGPTGTLLRAVIGRAQVDDVLREEVRNRWVEPRRESARELVRRGMDHGELRSDLDIDVVL
DTLYGPIYHRILVPYRDADLTEGFVDRIVDHVFTGIERAR

Sequences:

>Translated_200_residues
MTKSDGVDTAARPRGAVVTGSILSAARDLIDQHGLESLTAEAVAAHAGVGKTTVYRRWPNVWALVVDAFLEDVSAVAPIT
EGDTVRESFRTSMRSLIKAYRGPTGTLLRAVIGRAQVDDVLREEVRNRWVEPRRESARELVRRGMDHGELRSDLDIDVVL
DTLYGPIYHRILVPYRDADLTEGFVDRIVDHVFTGIERAR
>Mature_199_residues
TKSDGVDTAARPRGAVVTGSILSAARDLIDQHGLESLTAEAVAAHAGVGKTTVYRRWPNVWALVVDAFLEDVSAVAPITE
GDTVRESFRTSMRSLIKAYRGPTGTLLRAVIGRAQVDDVLREEVRNRWVEPRRESARELVRRGMDHGELRSDLDIDVVLD
TLYGPIYHRILVPYRDADLTEGFVDRIVDHVFTGIERAR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22262; Mature: 22131

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSDGVDTAARPRGAVVTGSILSAARDLIDQHGLESLTAEAVAAHAGVGKTTVYRRWPN
CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHCHH
VWALVVDAFLEDVSAVAPITEGDTVRESFRTSMRSLIKAYRGPTGTLLRAVIGRAQVDDV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LREEVRNRWVEPRRESARELVRRGMDHGELRSDLDIDVVLDTLYGPIYHRILVPYRDADL
HHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHH
TEGFVDRIVDHVFTGIERAR
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKSDGVDTAARPRGAVVTGSILSAARDLIDQHGLESLTAEAVAAHAGVGKTTVYRRWPN
CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHCHH
VWALVVDAFLEDVSAVAPITEGDTVRESFRTSMRSLIKAYRGPTGTLLRAVIGRAQVDDV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LREEVRNRWVEPRRESARELVRRGMDHGELRSDLDIDVVLDTLYGPIYHRILVPYRDADL
HHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHH
TEGFVDRIVDHVFTGIERAR
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]