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The map label for this gene is yagA [H]

Identifier: 108798621

GI number: 108798621

Start: 1788013

End: 1789089

Strand: Reverse

Name: yagA [H]

Synonym: Mmcs_1652

Alternate gene names: 108798621

Gene position: 1789089-1788013 (Counterclockwise)

Preceding gene: 108798663

Following gene: 108798608

Centisome position: 31.36

GC content: 64.35

Gene sequence:

>1077_bases
GTGACAGGGAAGGCCTCCGGTTGTGAAGTGGAGCTGTCTAGGAACCGCTTCACCAACCAGGAGGCCTTCGTGTCCCACGC
TAACGCTGCATTGACCCCACGCGCACGATTGAGGCTTGCGAGGCTCGTCGTCGAAACGGGCTGGACCTATGCCGCAGCGG
CCAAGATGTTCATGGTTTCACCGCGAACTGCCAAGAAATGGGCCGATCGCTTCCGCGCCGAAGGCACGGCTGGGATGGTC
GACCGCAGCTCACGGCCGCACCACAGTCCCACCAAGACCAGTCAGCAGGTGATGCGGCGGATCGTCGACGTGCGGTGGCG
CCAGCGGCTGGGACCGGTGCAGATCGCCGGCCAGCTCACCATGCCGGCCTCGACCGTGCACGCGGTGTTGACCCGGTGCC
GAATCAACCGCCTGTCCTACATCGACCGGGTCACCGGCGAACCCTTGCGGCGTTATGAGCACGCTCATCCGGGCTCGTTG
ATCCACGTCGACGTCACCAAGTTCGCCAACATTCCCGACGGCGGCGGACACAAGTTCCTCAGTCGAGAACACGGCGGACG
CAACAGACGACGGACCGCGCATCGGACCGGCGATCGCGGTGATCGCACCAAGAACTGGCGCCCGATAATCGGAACCGCGT
TCGTGCACACAGTGATCGATGATCACTCTCGGATGGCCTATGCCGAGATCTGCACCGACGAGAAGGCCGCTACCGCGGTC
GCCGTGTTGCAGCGGGCGGTGGCGTGGTTCTCCGAACGCGGCGTGACCGTTGAGCGCGTCCTATCGGACAACGGGTCGGC
CTACCGGTCCTACGCCTGGCGCGATGCCTGCACCCAACTACACATCACCCCCAAGCGAACCCGCCCGTACAGGCCGCAGA
CCAACGGCAAGATCGAACGATTCCACCGGACCCTGGCCGACGGCTGGGCCTACGCCCACTTCTACGAATCCACCGAACAA
CGCAACACCGCGCTACCGGACTGGCTGCACTTCTACAATCACCACCGAGCCCACTCCGCCATCGGAGGTCAGCCACCGGT
CACCCGACTGACCAACCTCCCTGGACATCACAGGTAG

Upstream 100 bases:

>100_bases
TACAGCGGGACGACCACGATCACGCCCGCGAGCAGACGAGTTGAGGCTAGGTAGGTGTGATGTCCAGGGAGGTTGTCCCG
TTTTGTATCGGTGAGCCTGT

Downstream 100 bases:

>100_bases
GCGATCGGCCGGATGCCCATCACCGCTAGCGCGTCGATTTCCTCGTTGATTTTCATCGCACCGAGCTGCGCGGTGGTACC
AGCACCGATCGTGGCGGCGA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MTGKASGCEVELSRNRFTNQEAFVSHANAALTPRARLRLARLVVETGWTYAAAAKMFMVSPRTAKKWADRFRAEGTAGMV
DRSSRPHHSPTKTSQQVMRRIVDVRWRQRLGPVQIAGQLTMPASTVHAVLTRCRINRLSYIDRVTGEPLRRYEHAHPGSL
IHVDVTKFANIPDGGGHKFLSREHGGRNRRRTAHRTGDRGDRTKNWRPIIGTAFVHTVIDDHSRMAYAEICTDEKAATAV
AVLQRAVAWFSERGVTVERVLSDNGSAYRSYAWRDACTQLHITPKRTRPYRPQTNGKIERFHRTLADGWAYAHFYESTEQ
RNTALPDWLHFYNHHRAHSAIGGQPPVTRLTNLPGHHR

Sequences:

>Translated_358_residues
MTGKASGCEVELSRNRFTNQEAFVSHANAALTPRARLRLARLVVETGWTYAAAAKMFMVSPRTAKKWADRFRAEGTAGMV
DRSSRPHHSPTKTSQQVMRRIVDVRWRQRLGPVQIAGQLTMPASTVHAVLTRCRINRLSYIDRVTGEPLRRYEHAHPGSL
IHVDVTKFANIPDGGGHKFLSREHGGRNRRRTAHRTGDRGDRTKNWRPIIGTAFVHTVIDDHSRMAYAEICTDEKAATAV
AVLQRAVAWFSERGVTVERVLSDNGSAYRSYAWRDACTQLHITPKRTRPYRPQTNGKIERFHRTLADGWAYAHFYESTEQ
RNTALPDWLHFYNHHRAHSAIGGQPPVTRLTNLPGHHR
>Mature_357_residues
TGKASGCEVELSRNRFTNQEAFVSHANAALTPRARLRLARLVVETGWTYAAAAKMFMVSPRTAKKWADRFRAEGTAGMVD
RSSRPHHSPTKTSQQVMRRIVDVRWRQRLGPVQIAGQLTMPASTVHAVLTRCRINRLSYIDRVTGEPLRRYEHAHPGSLI
HVDVTKFANIPDGGGHKFLSREHGGRNRRRTAHRTGDRGDRTKNWRPIIGTAFVHTVIDDHSRMAYAEICTDEKAATAVA
VLQRAVAWFSERGVTVERVLSDNGSAYRSYAWRDACTQLHITPKRTRPYRPQTNGKIERFHRTLADGWAYAHFYESTEQR
NTALPDWLHFYNHHRAHSAIGGQPPVTRLTNLPGHHR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=337, Percent_Identity=29.9703264094956, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 40701; Mature: 40569

Theoretical pI: Translated: 11.42; Mature: 11.42

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKASGCEVELSRNRFTNQEAFVSHANAALTPRARLRLARLVVETGWTYAAAAKMFMVS
CCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHEEC
PRTAKKWADRFRAEGTAGMVDRSSRPHHSPTKTSQQVMRRIVDVRWRQRLGPVQIAGQLT
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEC
MPASTVHAVLTRCRINRLSYIDRVTGEPLRRYEHAHPGSLIHVDVTKFANIPDGGGHKFL
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCCH
SREHGGRNRRRTAHRTGDRGDRTKNWRPIIGTAFVHTVIDDHSRMAYAEICTDEKAATAV
HHCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
AVLQRAVAWFSERGVTVERVLSDNGSAYRSYAWRDACTQLHITPKRTRPYRPQTNGKIER
HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHH
FHRTLADGWAYAHFYESTEQRNTALPDWLHFYNHHRAHSAIGGQPPVTRLTNLPGHHR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TGKASGCEVELSRNRFTNQEAFVSHANAALTPRARLRLARLVVETGWTYAAAAKMFMVS
CCCCCCCEEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHEEC
PRTAKKWADRFRAEGTAGMVDRSSRPHHSPTKTSQQVMRRIVDVRWRQRLGPVQIAGQLT
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEC
MPASTVHAVLTRCRINRLSYIDRVTGEPLRRYEHAHPGSLIHVDVTKFANIPDGGGHKFL
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCCH
SREHGGRNRRRTAHRTGDRGDRTKNWRPIIGTAFVHTVIDDHSRMAYAEICTDEKAATAV
HHCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
AVLQRAVAWFSERGVTVERVLSDNGSAYRSYAWRDACTQLHITPKRTRPYRPQTNGKIER
HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHH
FHRTLADGWAYAHFYESTEQRNTALPDWLHFYNHHRAHSAIGGQPPVTRLTNLPGHHR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]