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The map label for this gene is insF1 [C]

Identifier: 108798608

GI number: 108798608

Start: 1777527

End: 1778096

Strand: Reverse

Name: insF1 [C]

Synonym: Mmcs_1639

Alternate gene names: 108798608

Gene position: 1778096-1777527 (Counterclockwise)

Preceding gene: 108798621

Following gene: 108798597

Centisome position: 31.16

GC content: 64.74

Gene sequence:

>570_bases
ATGTCCGGTATCCGGATCTGGTGGACCGCCGGTTCTACGCGTCGGCCCCAAATCGGTTGTGGGTGGCTGACTTCACGTAT
GTGGCGACGTGGATGGGGTTCGTACGTGGCGTTCGTCATCGACGCCTACAGCCGCCGGATCGTGGGATGGCGAGCCGCTC
GGTCGATGACCACCGACCTGGTCCTCGACGCCATCGAGCACGCGTTCTTCACCCGCACCCAGGACGGCACCAGTCTGCGC
GGGCTGATCGCGCATTCGGATGCCGGCAGTCAGTACACCTCGGTGGCGTTCACCCAACGGCTCATCGACGAGGGAGTGGA
TCCGTCGGTCGGCTCGGTCGGTGACGCGCTGGACAACGCGCTGGCCGAGACCACCGTCGGGTCGTTCAAGAACGAGGTGA
TCCGCCGGCAAGGCCCGTGGCGCGACGTCAACCAGGTCGAGCTGGCCACCGCCGAGTGGGTGGTGTGGTTCAACACCGAG
CGTCCGCATGAGTACCTCGACGACTTCACCCCTGAGGCCGTCGAGAAGCTCCACTACGATCAAAAACTCACCCCACCAAA
GGCAGGGTGA

Upstream 100 bases:

>100_bases
GACGTCGCCCGCTGCACGGTGGAGCGGATCATGCGCGAGAACGGATGGGAAGGCGCCCGGTACGGGTCCAAACACAAGAC
CACCGTCGCCGATAGCAGCC

Downstream 100 bases:

>100_bases
TTCAACGAATGCAGCCTCCGGACTCGCCGGGAGGGGTCACACCTCGATCTCGATCTGCCCGCACGCATCGGTCAGTACGG
TCTTGGCCCGGGTTCCGTTG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSGIRIWWTAGSTRRPQIGCGWLTSRMWRRGWGSYVAFVIDAYSRRIVGWRAARSMTTDLVLDAIEHAFFTRTQDGTSLR
GLIAHSDAGSQYTSVAFTQRLIDEGVDPSVGSVGDALDNALAETTVGSFKNEVIRRQGPWRDVNQVELATAEWVVWFNTE
RPHEYLDDFTPEAVEKLHYDQKLTPPKAG

Sequences:

>Translated_189_residues
MSGIRIWWTAGSTRRPQIGCGWLTSRMWRRGWGSYVAFVIDAYSRRIVGWRAARSMTTDLVLDAIEHAFFTRTQDGTSLR
GLIAHSDAGSQYTSVAFTQRLIDEGVDPSVGSVGDALDNALAETTVGSFKNEVIRRQGPWRDVNQVELATAEWVVWFNTE
RPHEYLDDFTPEAVEKLHYDQKLTPPKAG
>Mature_188_residues
SGIRIWWTAGSTRRPQIGCGWLTSRMWRRGWGSYVAFVIDAYSRRIVGWRAARSMTTDLVLDAIEHAFFTRTQDGTSLRG
LIAHSDAGSQYTSVAFTQRLIDEGVDPSVGSVGDALDNALAETTVGSFKNEVIRRQGPWRDVNQVELATAEWVVWFNTER
PHEYLDDFTPEAVEKLHYDQKLTPPKAG

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=104, Percent_Identity=50, Blast_Score=97, Evalue=9e-21,
Organism=Escherichia coli, GI1788405, Length=147, Percent_Identity=31.2925170068027, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787263, Length=147, Percent_Identity=31.2925170068027, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786753, Length=147, Percent_Identity=31.2925170068027, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786570, Length=147, Percent_Identity=31.2925170068027, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786490, Length=147, Percent_Identity=31.2925170068027, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 21308; Mature: 21177

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIRIWWTAGSTRRPQIGCGWLTSRMWRRGWGSYVAFVIDAYSRRIVGWRAARSMTTDL
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLDAIEHAFFTRTQDGTSLRGLIAHSDAGSQYTSVAFTQRLIDEGVDPSVGSVGDALDNA
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LAETTVGSFKNEVIRRQGPWRDVNQVELATAEWVVWFNTERPHEYLDDFTPEAVEKLHYD
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHCCCHHHHHHHHCC
QKLTPPKAG
CCCCCCCCC
>Mature Secondary Structure 
SGIRIWWTAGSTRRPQIGCGWLTSRMWRRGWGSYVAFVIDAYSRRIVGWRAARSMTTDL
CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLDAIEHAFFTRTQDGTSLRGLIAHSDAGSQYTSVAFTQRLIDEGVDPSVGSVGDALDNA
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LAETTVGSFKNEVIRRQGPWRDVNQVELATAEWVVWFNTERPHEYLDDFTPEAVEKLHYD
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHCCCHHHHHHHHCC
QKLTPPKAG
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]