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The map label for this gene is intQ [C]

Identifier: 108798393

GI number: 108798393

Start: 1544982

End: 1546310

Strand: Reverse

Name: intQ [C]

Synonym: Mmcs_1422

Alternate gene names: 108798393

Gene position: 1546310-1544982 (Counterclockwise)

Preceding gene: 108798394

Following gene: 108798392

Centisome position: 27.1

GC content: 60.5

Gene sequence:

>1329_bases
GTGAAAGGAGCCGTCTATCAGCGTGGACGAACGTGGACGTACCGCTTCCGCGCAGCGGAGAAAGATCCATCGACCGGCCG
ATATCCCACGATCTCCAAGGGCGGCTTCTCGACTGAGAAGGAGGCTTGGAAGGCCTGTCGGGATGCGATGCGGGAAGCCG
ATGAGGGTCGCGTCGTCCGACCATCCACGCGTACGGTGACTCAGTTTCTGGACGAATGGTTCACCGCCGTTGAGGCATCA
CTCGACGCGACGACTTGGCAGAATTGGAAGGACTATGCGAAAAGCTACGTCGTGCCGCATATCGGGAACGTAAAGCTTCA
GCAGCTCGATGAGCCAGAGCTGCTGCGGCTTTACGCGAAGTTGCTGACCGAAGGTCGGATCAAGCAAGACCGAAACTACG
AAATGTACTGCTATTGGCGTCGCCATGCGATCGACGGGGAGTCGCCGGCGCCGCGCGAAGTCGCTGACGCCTGCGGCACA
ACGATTCACGCCGCTCGCGCCGCTGTTCGGCGATACAAGAGCGGCATACTCCCGACAAAGATGGATCCCGGACTTGCTCC
AAAGACCGTTCGAAACATTCACGCCATGATCCATCGAGCGATGGCCGATGCCGTCGCGTGGAAGTACAAGGCTCACAATC
CCGCGGCGAACGTACGGCCACCGAAGCGCTCCCGCTCCCGACGCACCGTGTGGAACCAAGAGGACATACAGAAGTTCCTG
CGCGCGGTCAGCCACGACCGGTTCGCATCGCTATTTCTTCTGGAGCTCACGACCGGCATACGTCGTGGGCAGATCTGCGG
CCTTCGATGGCACGACGTCGACCTGGACGTGCGCGAGGTTACGGTGCACGACAACCGAGTAGTAGTCGCCGGGCATGCGA
GAGACAAAGCCGGCGGCAAGACGCGAAATGCGGATCAGACCATTGCGATAGATCGAGTAACGGCGGCAGCACTTCGAAAG
TGGCGTGAGCATCAAAATGAAGAGCGGGCGTTCTTCGGTGCCGACTATCACCCTGGGAACTACGTCTTCACGTTCGAGGA
TGGGCGGCCACCGCACCCCGACTCCATCCGCCAACGATTCGATCGCCTCGCGGCGGTCGCCGGCCTCCCACGGATCACTT
TTCACGATCTCCGACACTCATACGCGACAGCAGCCCTCAAGGCCGGGGTGAATCCCAAGATCGTGAGCGAGCGTATCGGG
CACGCGGACGTCGGTTTCTTTCTGCAAACCTACGCTCACGTCCTCAAGAATGACGACCGAGACGCTGCCGAGCAGGCGGC
AGCGTTCCTCATCGGAGATCAGTACGGATCGTCAGCCACCTCCGAGTGA

Upstream 100 bases:

>100_bases
CCGCCGCTTACCGGCTCGCCGCGTCGGGTGAACTCCCAGTGCGTAGGCTGGGCGGCCGCGTCTACGTCGTCACTTCTGAA
TTGCGCCAGTTGGTCGCCTC

Downstream 100 bases:

>100_bases
GGCCCGCAACGTGCAGGATGTTGCGGCACTGGCCGGGAGCGACCCACAGGTCAGTAGCCCGACCGTCACAATTGACGATG
ATGGACGACCACGAACTTGA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKGAVYQRGRTWTYRFRAAEKDPSTGRYPTISKGGFSTEKEAWKACRDAMREADEGRVVRPSTRTVTQFLDEWFTAVEAS
LDATTWQNWKDYAKSYVVPHIGNVKLQQLDEPELLRLYAKLLTEGRIKQDRNYEMYCYWRRHAIDGESPAPREVADACGT
TIHAARAAVRRYKSGILPTKMDPGLAPKTVRNIHAMIHRAMADAVAWKYKAHNPAANVRPPKRSRSRRTVWNQEDIQKFL
RAVSHDRFASLFLLELTTGIRRGQICGLRWHDVDLDVREVTVHDNRVVVAGHARDKAGGKTRNADQTIAIDRVTAAALRK
WREHQNEERAFFGADYHPGNYVFTFEDGRPPHPDSIRQRFDRLAAVAGLPRITFHDLRHSYATAALKAGVNPKIVSERIG
HADVGFFLQTYAHVLKNDDRDAAEQAAAFLIGDQYGSSATSE

Sequences:

>Translated_442_residues
MKGAVYQRGRTWTYRFRAAEKDPSTGRYPTISKGGFSTEKEAWKACRDAMREADEGRVVRPSTRTVTQFLDEWFTAVEAS
LDATTWQNWKDYAKSYVVPHIGNVKLQQLDEPELLRLYAKLLTEGRIKQDRNYEMYCYWRRHAIDGESPAPREVADACGT
TIHAARAAVRRYKSGILPTKMDPGLAPKTVRNIHAMIHRAMADAVAWKYKAHNPAANVRPPKRSRSRRTVWNQEDIQKFL
RAVSHDRFASLFLLELTTGIRRGQICGLRWHDVDLDVREVTVHDNRVVVAGHARDKAGGKTRNADQTIAIDRVTAAALRK
WREHQNEERAFFGADYHPGNYVFTFEDGRPPHPDSIRQRFDRLAAVAGLPRITFHDLRHSYATAALKAGVNPKIVSERIG
HADVGFFLQTYAHVLKNDDRDAAEQAAAFLIGDQYGSSATSE
>Mature_442_residues
MKGAVYQRGRTWTYRFRAAEKDPSTGRYPTISKGGFSTEKEAWKACRDAMREADEGRVVRPSTRTVTQFLDEWFTAVEAS
LDATTWQNWKDYAKSYVVPHIGNVKLQQLDEPELLRLYAKLLTEGRIKQDRNYEMYCYWRRHAIDGESPAPREVADACGT
TIHAARAAVRRYKSGILPTKMDPGLAPKTVRNIHAMIHRAMADAVAWKYKAHNPAANVRPPKRSRSRRTVWNQEDIQKFL
RAVSHDRFASLFLLELTTGIRRGQICGLRWHDVDLDVREVTVHDNRVVVAGHARDKAGGKTRNADQTIAIDRVTAAALRK
WREHQNEERAFFGADYHPGNYVFTFEDGRPPHPDSIRQRFDRLAAVAGLPRITFHDLRHSYATAALKAGVNPKIVSERIG
HADVGFFLQTYAHVLKNDDRDAAEQAAAFLIGDQYGSSATSE

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 50227; Mature: 50227

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGAVYQRGRTWTYRFRAAEKDPSTGRYPTISKGGFSTEKEAWKACRDAMREADEGRVVR
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEC
PSTRTVTQFLDEWFTAVEASLDATTWQNWKDYAKSYVVPHIGNVKLQQLDEPELLRLYAK
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
LLTEGRIKQDRNYEMYCYWRRHAIDGESPAPREVADACGTTIHAARAAVRRYKSGILPTK
HHHCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCCCCC
MDPGLAPKTVRNIHAMIHRAMADAVAWKYKAHNPAANVRPPKRSRSRRTVWNQEDIQKFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHCCCCCCCCCHHHHHHHH
RAVSHDRFASLFLLELTTGIRRGQICGLRWHDVDLDVREVTVHDNRVVVAGHARDKAGGK
HHHCCHHHHHHHHHHHHCCCCCCCEECEEEECCCCCEEEEEEECCEEEEEECCCCCCCCC
TRNADQTIAIDRVTAAALRKWREHQNEERAFFGADYHPGNYVFTFEDGRPPHPDSIRQRF
CCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHH
DRLAAVAGLPRITFHDLRHSYATAALKAGVNPKIVSERIGHADVGFFLQTYAHVLKNDDR
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
DAAEQAAAFLIGDQYGSSATSE
HHHHHHHHHHEECCCCCCCCCC
>Mature Secondary Structure
MKGAVYQRGRTWTYRFRAAEKDPSTGRYPTISKGGFSTEKEAWKACRDAMREADEGRVVR
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEC
PSTRTVTQFLDEWFTAVEASLDATTWQNWKDYAKSYVVPHIGNVKLQQLDEPELLRLYAK
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
LLTEGRIKQDRNYEMYCYWRRHAIDGESPAPREVADACGTTIHAARAAVRRYKSGILPTK
HHHCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCCCCC
MDPGLAPKTVRNIHAMIHRAMADAVAWKYKAHNPAANVRPPKRSRSRRTVWNQEDIQKFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHCCCCCCCCCHHHHHHHH
RAVSHDRFASLFLLELTTGIRRGQICGLRWHDVDLDVREVTVHDNRVVVAGHARDKAGGK
HHHCCHHHHHHHHHHHHCCCCCCCEECEEEECCCCCEEEEEEECCEEEEEECCCCCCCCC
TRNADQTIAIDRVTAAALRKWREHQNEERAFFGADYHPGNYVFTFEDGRPPHPDSIRQRF
CCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHH
DRLAAVAGLPRITFHDLRHSYATAALKAGVNPKIVSERIGHADVGFFLQTYAHVLKNDDR
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
DAAEQAAAFLIGDQYGSSATSE
HHHHHHHHHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]