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The map label for this gene is yhjD [H]

Identifier: 108798184

GI number: 108798184

Start: 1312641

End: 1313660

Strand: Direct

Name: yhjD [H]

Synonym: Mmcs_1213

Alternate gene names: 108798184

Gene position: 1312641-1313660 (Clockwise)

Preceding gene: 108798183

Following gene: 108798186

Centisome position: 23.01

GC content: 67.84

Gene sequence:

>1020_bases
ATGGACGAACCGGCCGAGCCGGGAAAGCTGGACCGGCTGCGCGCCCGATACGGCTGGTTCGACCACGTCATGCGGGCGCA
GGAGCGATACAAGGAGAGCAAGGGCGACTTCTACGCCGCGGGGATCACGTACTTCACCGTGTTCGCGCTGTTCCCGCTCC
TGATGCTCGGCTTCTCCATCGCCGGGTTCGTCCTTGCCAGCCAACCCGATGTGATCGCCGCGATCGCCGACCGGATCCGG
CAGACCGTCTCCGGTGACGTCGGTCGGCAACTCGTCGACCTGATGAACACCGCGATCGGATCGCGCACATCGCTCGGCAT
CTTCGGCCTGGCCACCGCGGCGTGGGCCGGACTCGGGTGGATGAACAACCTCCGCGAGGCGTTGACGGCGATGTGGCAGC
AGCGCAGTGAGACCGGAAATTTCTTCGGTACGAAGCTGTCGGACCTGATCGCACTGCTGTCGGCCTTCCTGGCGATCGTC
GTCACCGTCGCACTGACCGCGCTGGGTGATCAGGGGGTGATCACGAGGTTGCTGGCCTGGGTGGGGATCGAGGACATCCC
GGGTCTGCGGTGGGGGCTGCGGGCCGCGTCGCTGCTGGTGGCGGTCGGCATCTCGTGGCTCCTGTTCACCTGGATGATCT
CCCGCCTGCCGCGCGAGTCTGTCAGCTTCCGCAGCAGTGTGCGGGCGGGCCTCCTGGCCGCCGTGGCCTTCGAGATCTTC
AAGCAGGTGGCATCGATCTACCTGCGCACGGTGCTCACCGGTCCCGCGGGCGCGACGTTCGGACCCGTGCTCGGTCTGAT
GGTGTTCGCCTACATCACCGCACGGTTGATCCTGTTCGCGACCGCGTGGGCCGCGACCTCGCGGGAGAACCTGGTCGAGG
AACCGGTGGAACCGCCCAGCCCCGCTCAGATCAACCCGCGGGTGCAGGTGCGCGAGGGTGTCGGCGTGCCGGGAGCGATG
GCCGCCGCGGCTGTGGGAGCACTTGGCGCCGTTGGGGTTTCGCGACTGCGCCGGCGCTAG

Upstream 100 bases:

>100_bases
GGGCGCCGAACGGGCCCGTGACGTGACTGCCAAGACGCTCCAGCGGGTATACGACCGGCTGGGATTGCTGCGCCCGCGGG
CATGACGACTGGAGGCTGGT

Downstream 100 bases:

>100_bases
TGGCCCTGGCTGACCAGTTGCAGGCCGACAACGCAGCCGACGATGCCCAGCAGGAGCGCCACCTTGATCACCGATGCGCT
CTCCTCGCCGGTCACCAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MDEPAEPGKLDRLRARYGWFDHVMRAQERYKESKGDFYAAGITYFTVFALFPLLMLGFSIAGFVLASQPDVIAAIADRIR
QTVSGDVGRQLVDLMNTAIGSRTSLGIFGLATAAWAGLGWMNNLREALTAMWQQRSETGNFFGTKLSDLIALLSAFLAIV
VTVALTALGDQGVITRLLAWVGIEDIPGLRWGLRAASLLVAVGISWLLFTWMISRLPRESVSFRSSVRAGLLAAVAFEIF
KQVASIYLRTVLTGPAGATFGPVLGLMVFAYITARLILFATAWAATSRENLVEEPVEPPSPAQINPRVQVREGVGVPGAM
AAAAVGALGAVGVSRLRRR

Sequences:

>Translated_339_residues
MDEPAEPGKLDRLRARYGWFDHVMRAQERYKESKGDFYAAGITYFTVFALFPLLMLGFSIAGFVLASQPDVIAAIADRIR
QTVSGDVGRQLVDLMNTAIGSRTSLGIFGLATAAWAGLGWMNNLREALTAMWQQRSETGNFFGTKLSDLIALLSAFLAIV
VTVALTALGDQGVITRLLAWVGIEDIPGLRWGLRAASLLVAVGISWLLFTWMISRLPRESVSFRSSVRAGLLAAVAFEIF
KQVASIYLRTVLTGPAGATFGPVLGLMVFAYITARLILFATAWAATSRENLVEEPVEPPSPAQINPRVQVREGVGVPGAM
AAAAVGALGAVGVSRLRRR
>Mature_339_residues
MDEPAEPGKLDRLRARYGWFDHVMRAQERYKESKGDFYAAGITYFTVFALFPLLMLGFSIAGFVLASQPDVIAAIADRIR
QTVSGDVGRQLVDLMNTAIGSRTSLGIFGLATAAWAGLGWMNNLREALTAMWQQRSETGNFFGTKLSDLIALLSAFLAIV
VTVALTALGDQGVITRLLAWVGIEDIPGLRWGLRAASLLVAVGISWLLFTWMISRLPRESVSFRSSVRAGLLAAVAFEIF
KQVASIYLRTVLTGPAGATFGPVLGLMVFAYITARLILFATAWAATSRENLVEEPVEPPSPAQINPRVQVREGVGVPGAM
AAAAVGALGAVGVSRLRRR

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=294, Percent_Identity=36.3945578231293, Blast_Score=183, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 36561; Mature: 36561

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEPAEPGKLDRLRARYGWFDHVMRAQERYKESKGDFYAAGITYFTVFALFPLLMLGFSI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
AGFVLASQPDVIAAIADRIRQTVSGDVGRQLVDLMNTAIGSRTSLGIFGLATAAWAGLGW
HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MNNLREALTAMWQQRSETGNFFGTKLSDLIALLSAFLAIVVTVALTALGDQGVITRLLAW
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VGIEDIPGLRWGLRAASLLVAVGISWLLFTWMISRLPRESVSFRSSVRAGLLAAVAFEIF
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
KQVASIYLRTVLTGPAGATFGPVLGLMVFAYITARLILFATAWAATSRENLVEEPVEPPS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAQINPRVQVREGVGVPGAMAAAAVGALGAVGVSRLRRR
CCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDEPAEPGKLDRLRARYGWFDHVMRAQERYKESKGDFYAAGITYFTVFALFPLLMLGFSI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
AGFVLASQPDVIAAIADRIRQTVSGDVGRQLVDLMNTAIGSRTSLGIFGLATAAWAGLGW
HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MNNLREALTAMWQQRSETGNFFGTKLSDLIALLSAFLAIVVTVALTALGDQGVITRLLAW
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VGIEDIPGLRWGLRAASLLVAVGISWLLFTWMISRLPRESVSFRSSVRAGLLAAVAFEIF
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
KQVASIYLRTVLTGPAGATFGPVLGLMVFAYITARLILFATAWAATSRENLVEEPVEPPS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAQINPRVQVREGVGVPGAMAAAAVGALGAVGVSRLRRR
CCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]