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The map label for this gene is deoC [H]

Identifier: 108797626

GI number: 108797626

Start: 707924

End: 708604

Strand: Direct

Name: deoC [H]

Synonym: Mmcs_0646

Alternate gene names: 108797626

Gene position: 707924-708604 (Clockwise)

Preceding gene: 108797625

Following gene: 108797629

Centisome position: 12.41

GC content: 71.81

Gene sequence:

>681_bases
ATGGGCGGGTGGACCCGCGAACGCGTGGCCGGACTCGTCGACCACACGCTCCTCAAACCGGAGGCCGGCGAGGGGGACGT
CGAGGCACTCGTGGAGGAGGCCGAGGCACTCGGCGTCTATGCCGCCTGCGTATCGCCCTCGATGGTGCCCGCCGCCGTCC
GCGTCCGCCCGTTCAGTACCAAGATCGCGGCCGTCGTCGGCTTTCCCTCCGGTAAGCACCTCCCGGCCGTCAAGGCACAC
GAGGCCGCGCTCGCCGTCGCCGCCGGAGCCGACGAGATCGACATGGTGATCGACGTCGGCGCCGCCCTGGCCGGTGACAT
CGATGCGGTGCGTGCCGACATCGCCGCGGTGCGCGCCGCGATCGGCGAGCGCACCCTGCTCAAGGTCATCGTGGAATCGG
CCGCGCTGCTCGAACTCGGCGGCCGCGACGTGCTCGTCGACACGTGTCTGGCCGCCAAGGCCGTCGGCGCCGAATACGTC
AAGACCTCGACGGGGTTCCACCCGCTCGGCGGTGCTTCGGCGGGCGCGGTCGAGATCATGGTCGCGGCGGTCGGACCGCA
GGTCGAGGTCAAGGCCAGCGGTGGCATCCGCACCGCCGCCGACGCGATCGCGATGCTCGACGCGGGGGCGACCCGGTTGG
GTCTGTCGGCCACCCGCGCCGTACTCGACGATCTGGACTGA

Upstream 100 bases:

>100_bases
GTAAGACGAGCTGGAACCTCGAGCCGTGGCGACCGGAGGTCCCCGTCGAGCAGATGGTGGCCGCCGGCTGCAATCCCGGC
GGCACCGAAGAGCCGTTCTG

Downstream 100 bases:

>100_bases
ACCGGGCTCAGAGCCCGTTGAAGCAGGGGTCCTCGCCGCTCTTCGGGATCTCGGCGTTCTGCGTCGAGAACAATGCCGTC
ACGCCGGTGTCGGTGACCTC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MGGWTRERVAGLVDHTLLKPEAGEGDVEALVEEAEALGVYAACVSPSMVPAAVRVRPFSTKIAAVVGFPSGKHLPAVKAH
EAALAVAAGADEIDMVIDVGAALAGDIDAVRADIAAVRAAIGERTLLKVIVESAALLELGGRDVLVDTCLAAKAVGAEYV
KTSTGFHPLGGASAGAVEIMVAAVGPQVEVKASGGIRTAADAIAMLDAGATRLGLSATRAVLDDLD

Sequences:

>Translated_226_residues
MGGWTRERVAGLVDHTLLKPEAGEGDVEALVEEAEALGVYAACVSPSMVPAAVRVRPFSTKIAAVVGFPSGKHLPAVKAH
EAALAVAAGADEIDMVIDVGAALAGDIDAVRADIAAVRAAIGERTLLKVIVESAALLELGGRDVLVDTCLAAKAVGAEYV
KTSTGFHPLGGASAGAVEIMVAAVGPQVEVKASGGIRTAADAIAMLDAGATRLGLSATRAVLDDLD
>Mature_225_residues
GGWTRERVAGLVDHTLLKPEAGEGDVEALVEEAEALGVYAACVSPSMVPAAVRVRPFSTKIAAVVGFPSGKHLPAVKAHE
AALAVAAGADEIDMVIDVGAALAGDIDAVRADIAAVRAAIGERTLLKVIVESAALLELGGRDVLVDTCLAAKAVGAEYVK
TSTGFHPLGGASAGAVEIMVAAVGPQVEVKASGGIRTAADAIAMLDAGATRLGLSATRAVLDDLD

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=201, Percent_Identity=30.8457711442786, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19922098, Length=207, Percent_Identity=31.8840579710145, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 22653; Mature: 22522

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGWTRERVAGLVDHTLLKPEAGEGDVEALVEEAEALGVYAACVSPSMVPAAVRVRPFST
CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
KIAAVVGFPSGKHLPAVKAHEAALAVAAGADEIDMVIDVGAALAGDIDAVRADIAAVRAA
EEEEEEECCCCCCCCCCHHHHHHEEEECCCCCHHHHEEHHHHHHCCHHHHHHHHHHHHHH
IGERTLLKVIVESAALLELGGRDVLVDTCLAAKAVGAEYVKTSTGFHPLGGASAGAVEIM
HCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCEEEE
VAAVGPQVEVKASGGIRTAADAIAMLDAGATRLGLSATRAVLDDLD
EEECCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GGWTRERVAGLVDHTLLKPEAGEGDVEALVEEAEALGVYAACVSPSMVPAAVRVRPFST
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
KIAAVVGFPSGKHLPAVKAHEAALAVAAGADEIDMVIDVGAALAGDIDAVRADIAAVRAA
EEEEEEECCCCCCCCCCHHHHHHEEEECCCCCHHHHEEHHHHHHCCHHHHHHHHHHHHHH
IGERTLLKVIVESAALLELGGRDVLVDTCLAAKAVGAEYVKTSTGFHPLGGASAGAVEIM
HCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCEEEE
VAAVGPQVEVKASGGIRTAADAIAMLDAGATRLGLSATRAVLDDLD
EEECCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA