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The map label for this gene is yafC [C]

Identifier: 108763780

GI number: 108763780

Start: 3691217

End: 3692104

Strand: Reverse

Name: yafC [C]

Synonym: MXAN_3151

Alternate gene names: 108763780

Gene position: 3692104-3691217 (Counterclockwise)

Preceding gene: 108762129

Following gene: 108758880

Centisome position: 40.4

GC content: 65.54

Gene sequence:

>888_bases
ATGAAACGCGCCCATCTGGATGAGATCTTCGCCTTCATGGCCGTCGTGGACGCGGGCAGTTTCGTCAGCGGTGGCCGAGC
CATCGGGCTGACGCGCTCGGCGGCTGGCAAGGCCCTGGCCCGGCTGGAATCCCGCCTGGGGGTGCGTCTGCTCAATCGCA
CGACGCGCCACCTGAGTCTCACCGACGATGGCCGTGTCTTCCATGAGCATTGCCAACAAGTCCTGGCGGCTTTGGATGAT
GCGGAAGCCAGCGTTGGAGACCACACGGGCACGCCCCGGGGCGTCTTGCGAATCACCGTGCCCGACGCATTCGGCAGACT
GCATGTCCTGCCCGTGCTGAAGAAATATCTGCAGACCTGGCCCGACGTGCAGGTGGAGGTGAGCTTCACCGATCGCGTCG
CGGACATCATCGAGGAGGGTTACGACCTGGCCGTGCGCATCAATGTCACCAGCACCGATACGCGACTGGTGTCCCGGCTC
GTGGCGCAACATCGGGTGTTCGTCTGCGCCGCCCCCTCGTACCTGGCCGCGCGCGGCGAACCCCAGACATTGGAGGAGCT
CGCGACGCATGATTGCCTGCTCTTCAGTAGCCGGGCGCGACGACAGCGCTGGCGACTGCGCCCGAAGGGCGGCGCCTATG
TGACCGTGGAGGGTCAAAGCCGCCTACGGCTCGACAGCGGCGAGGCCATCCGGGACGCGGCTGTCGCGGGACTGGGCATC
GCCTTTCTTCCCAGCTTTCTGGTCGACGAAGACCTGGCGCGTGGACGCCTCAAGGCGCTGCTGCCGTCATGCGAGACGGA
GGTCGTCCGGATCATGGCGTTCTACCCGAGCAAACGTCACCTGCCAGCCAAGGTGCGGCGCTTCATCGACCTGTTGGTCG
AGCAATAG

Upstream 100 bases:

>100_bases
AGGTTGAGGAAAGGAGCGATTGCCGGACGCGTATACCGAGCCCACTGACGAACGGCGTTCCCCACTCCAGCGACAGGAGG
GCTACAATCAAGAGCCCGCC

Downstream 100 bases:

>100_bases
CGCGCGAAGGCGCCCCCCGCGGTGGCTCAGGTATCCGTGAGGCGGAGGACCTCCAAGCGCCCCGGGCGCGAGAAGTACCG
AGCGTGCTGAGTCTTGCGAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKRAHLDEIFAFMAVVDAGSFVSGGRAIGLTRSAAGKALARLESRLGVRLLNRTTRHLSLTDDGRVFHEHCQQVLAALDD
AEASVGDHTGTPRGVLRITVPDAFGRLHVLPVLKKYLQTWPDVQVEVSFTDRVADIIEEGYDLAVRINVTSTDTRLVSRL
VAQHRVFVCAAPSYLAARGEPQTLEELATHDCLLFSSRARRQRWRLRPKGGAYVTVEGQSRLRLDSGEAIRDAAVAGLGI
AFLPSFLVDEDLARGRLKALLPSCETEVVRIMAFYPSKRHLPAKVRRFIDLLVEQ

Sequences:

>Translated_295_residues
MKRAHLDEIFAFMAVVDAGSFVSGGRAIGLTRSAAGKALARLESRLGVRLLNRTTRHLSLTDDGRVFHEHCQQVLAALDD
AEASVGDHTGTPRGVLRITVPDAFGRLHVLPVLKKYLQTWPDVQVEVSFTDRVADIIEEGYDLAVRINVTSTDTRLVSRL
VAQHRVFVCAAPSYLAARGEPQTLEELATHDCLLFSSRARRQRWRLRPKGGAYVTVEGQSRLRLDSGEAIRDAAVAGLGI
AFLPSFLVDEDLARGRLKALLPSCETEVVRIMAFYPSKRHLPAKVRRFIDLLVEQ
>Mature_295_residues
MKRAHLDEIFAFMAVVDAGSFVSGGRAIGLTRSAAGKALARLESRLGVRLLNRTTRHLSLTDDGRVFHEHCQQVLAALDD
AEASVGDHTGTPRGVLRITVPDAFGRLHVLPVLKKYLQTWPDVQVEVSFTDRVADIIEEGYDLAVRINVTSTDTRLVSRL
VAQHRVFVCAAPSYLAARGEPQTLEELATHDCLLFSSRARRQRWRLRPKGGAYVTVEGQSRLRLDSGEAIRDAAVAGLGI
AFLPSFLVDEDLARGRLKALLPSCETEVVRIMAFYPSKRHLPAKVRRFIDLLVEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=32.5423728813559, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=29.4117647058824, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=27.8350515463918, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1789440, Length=282, Percent_Identity=29.7872340425532, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=28.5234899328859, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=28.7162162162162, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=29.5138888888889, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788481, Length=302, Percent_Identity=27.1523178807947, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=23.9057239057239, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789173, Length=252, Percent_Identity=23.015873015873, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI157672245, Length=131, Percent_Identity=27.4809160305344, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790011, Length=304, Percent_Identity=23.0263157894737, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32673; Mature: 32673

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAHLDEIFAFMAVVDAGSFVSGGRAIGLTRSAAGKALARLESRLGVRLLNRTTRHLSL
CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHEEEE
TDDGRVFHEHCQQVLAALDDAEASVGDHTGTPRGVLRITVPDAFGRLHVLPVLKKYLQTW
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
PDVQVEVSFTDRVADIIEEGYDLAVRINVTSTDTRLVSRLVAQHRVFVCAAPSYLAARGE
CCCEEEEEHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCEEEEECCHHHHCCCC
PQTLEELATHDCLLFSSRARRQRWRLRPKGGAYVTVEGQSRLRLDSGEAIRDAAVAGLGI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHH
AFLPSFLVDEDLARGRLKALLPSCETEVVRIMAFYPSKRHLPAKVRRFIDLLVEQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRAHLDEIFAFMAVVDAGSFVSGGRAIGLTRSAAGKALARLESRLGVRLLNRTTRHLSL
CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHEEEE
TDDGRVFHEHCQQVLAALDDAEASVGDHTGTPRGVLRITVPDAFGRLHVLPVLKKYLQTW
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
PDVQVEVSFTDRVADIIEEGYDLAVRINVTSTDTRLVSRLVAQHRVFVCAAPSYLAARGE
CCCEEEEEHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCEEEEECCHHHHCCCC
PQTLEELATHDCLLFSSRARRQRWRLRPKGGAYVTVEGQSRLRLDSGEAIRDAAVAGLGI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHH
AFLPSFLVDEDLARGRLKALLPSCETEVVRIMAFYPSKRHLPAKVRRFIDLLVEQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]