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The map label for this gene is ygcF [C]

Identifier: 108763752

GI number: 108763752

Start: 537051

End: 537743

Strand: Reverse

Name: ygcF [C]

Synonym: MXAN_0478

Alternate gene names: 108763752

Gene position: 537743-537051 (Counterclockwise)

Preceding gene: 108759999

Following gene: 108757138

Centisome position: 5.88

GC content: 67.24

Gene sequence:

>693_bases
ATGCCCGCAGCGCGCCCACACATCGAGCCCCGACGCGTCCCCACCGCGGACTCCGTGGTGGTGAAGGAAATCTACCTCAG
CGTCCAGGGGGAGTCCTCCCACGCCGGACTGCTGTGCGCCTTCATCCGCCTCACGGGCTGCCACCTGCGCTGCACCTACT
GCGACAGCGAGTTCGCCTTCCACGGCGGCGCGCGCCGGAAAATCGCGGACATCGTCAGCGAGGTGCGGGGCCTGCGCACG
CCCATGGTGGAGGTCACCGGCGGCGAGCCCCTGCTCCAGCCCGGCGTCTACCCGCTGATGGAGGCGCTGCTCGACGCCGG
CTTCAAGGTGCTGCTGGAGACGAGCGGCGCCATCGACGTGCGGCTGGTGCCTCCGGCGGTGCACAAAATCGTCGACATGA
AGACGCCCTCCTCGGGCGAGCACCTGCGCAACGACTACCGCAACTTCACGTCGATGAACGCCAACGACGAGCTGAAGTTC
GTCATCGGCTCGCGCGAGGACTACGACTGGGCCAAGGCGCTCATCGCCGAGCACCAACTGCTCCAGAAGCCCTACGGCAG
CCTGTTCTCCACCGTGTTCGACAAGCTCCACCCGCGCGAGCTCGCCGAATGGGTCATCGAGGACAGGCTCGCCGTGCGCT
TCCAACTGCAGATGCACAAGTACATGTGGGACCCGAACGCGCGCGGCGTGTGA

Upstream 100 bases:

>100_bases
CCGCCCCTTGACCCCTCCTCAGGCGAGGCAACAGGCCGCGCTTGACCTGGCGCGGCAGGTTGGGGTTGAAGCACGCCTCC
CTCGAATCAGCGAAGAAGCC

Downstream 100 bases:

>100_bases
GCGCGGCGCGCACGGCCCTCAAGGTCCGAAGCCCCAGAACACGACGGCCAGCCAGCTCGAGGCCAGCCCCAGGTTCACCC
AGCCGAGCCCCGTGGTCACC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPAARPHIEPRRVPTADSVVVKEIYLSVQGESSHAGLLCAFIRLTGCHLRCTYCDSEFAFHGGARRKIADIVSEVRGLRT
PMVEVTGGEPLLQPGVYPLMEALLDAGFKVLLETSGAIDVRLVPPAVHKIVDMKTPSSGEHLRNDYRNFTSMNANDELKF
VIGSREDYDWAKALIAEHQLLQKPYGSLFSTVFDKLHPRELAEWVIEDRLAVRFQLQMHKYMWDPNARGV

Sequences:

>Translated_230_residues
MPAARPHIEPRRVPTADSVVVKEIYLSVQGESSHAGLLCAFIRLTGCHLRCTYCDSEFAFHGGARRKIADIVSEVRGLRT
PMVEVTGGEPLLQPGVYPLMEALLDAGFKVLLETSGAIDVRLVPPAVHKIVDMKTPSSGEHLRNDYRNFTSMNANDELKF
VIGSREDYDWAKALIAEHQLLQKPYGSLFSTVFDKLHPRELAEWVIEDRLAVRFQLQMHKYMWDPNARGV
>Mature_229_residues
PAARPHIEPRRVPTADSVVVKEIYLSVQGESSHAGLLCAFIRLTGCHLRCTYCDSEFAFHGGARRKIADIVSEVRGLRTP
MVEVTGGEPLLQPGVYPLMEALLDAGFKVLLETSGAIDVRLVPPAVHKIVDMKTPSSGEHLRNDYRNFTSMNANDELKFV
IGSREDYDWAKALIAEHQLLQKPYGSLFSTVFDKLHPRELAEWVIEDRLAVRFQLQMHKYMWDPNARGV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25885; Mature: 25754

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAARPHIEPRRVPTADSVVVKEIYLSVQGESSHAGLLCAFIRLTGCHLRCTYCDSEFAF
CCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCEEEEEEECCCHHH
HGGARRKIADIVSEVRGLRTPMVEVTGGEPLLQPGVYPLMEALLDAGFKVLLETSGAIDV
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEE
RLVPPAVHKIVDMKTPSSGEHLRNDYRNFTSMNANDELKFVIGSREDYDWAKALIAEHQL
EECCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
LQKPYGSLFSTVFDKLHPRELAEWVIEDRLAVRFQLQMHKYMWDPNARGV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PAARPHIEPRRVPTADSVVVKEIYLSVQGESSHAGLLCAFIRLTGCHLRCTYCDSEFAF
CCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCEEEEEEECCCHHH
HGGARRKIADIVSEVRGLRTPMVEVTGGEPLLQPGVYPLMEALLDAGFKVLLETSGAIDV
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEE
RLVPPAVHKIVDMKTPSSGEHLRNDYRNFTSMNANDELKFVIGSREDYDWAKALIAEHQL
EECCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
LQKPYGSLFSTVFDKLHPRELAEWVIEDRLAVRFQLQMHKYMWDPNARGV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]