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The map label for this gene is cph2 [H]

Identifier: 108763732

GI number: 108763732

Start: 4416335

End: 4418467

Strand: Direct

Name: cph2 [H]

Synonym: MXAN_3705

Alternate gene names: 108763732

Gene position: 4416335-4418467 (Clockwise)

Preceding gene: 108762160

Following gene: 108762138

Centisome position: 48.32

GC content: 69.2

Gene sequence:

>2133_bases
TTGCTGCGTCTCGCGGTCCGGTCCATTCCCGCCGCGGCCTCGCTCGCCACGTTCATCCACCTGGCGCGCGGCGGCTTCCG
GGGGTTGAACACCCTGGGGTGGACCGAGGCGGCCCTGGTGGGCTGCCTCCTGGTGGGCATCGCCGTGGCCGCCTGGCGCC
GGGCCATGCGTGGCGCGGTGGGCGCAATCGTCGACCTGCGCGATGACCTGGACCTGGGCGGCACGCTCATCTCCGCGGCC
TTCGTCGTGGTGGCCATTGGCGGCGGGGACTTGTTCCCCATCGTCTACCTGCTGATGGCGTTCCTGGTGGCCTTCCTGCC
GCGCAACGCGGGCCTCACGCTGCTGGGCGTGGCGCTGGTGTACGACGCGCTGGTGACCCTGGGCGGTCCGGTGCCCAACG
CCACGGGCTACCTGACGCACGCGGCCTTCCTGGCGCTGTTCTCCGGCCTCTACCACCTGGTGCTGGCGGCACGCATCGCC
GCCGCGCGCCGGGCGGAGAGCGACGCGGTGCAAAAGCGCATCCGTGAGGTGGAGGAGCGGGCGCGCACCTTCCGGCTGGT
GTCGTCCGGTACGCAGGACAGCTTCAGCGGGATGAGCTCGGACGAGAAGTGGCTGGTGGCCTCGGTGAAGGAGATCGAAG
GCGCCGTGCAGGCCGCGCTCGAAATCGCGGAGACGGGGCTGCGCACGTACACCTGCGCCGCGTTCCTGCTCACTTCGGAT
GATCGGAGCCTCAAGCTGTACGACTGCCGCTCCGGCTCCGAGCGCGTGCAGCGCGAGCGCTTCAACGCGGGTGAGGGCAT
CATCGGCGGTGTGCTCAAGCGCCGCGCCCCGGTGCGGATGAACTCGCCGAACGGGCTCAAGGGCGTGACGCACTACGAGG
GCAGCGGCCCCGCGGTGCAGGCGCTGCTCGCGGTGCCCATCCTGGAGGCCAGCGGACTGGTGCGCGGCGTGCTGGTGGCG
GACCGGCTGGCGAACGAGCCCTTCAGCGACCAGGACGAAAAGCTGCTGTCCACCATTGCCGGCGAGGTGCTGCGCTCCAT
CGAGGTGGAGCGGGTGATGAGCTACATCCGCAAGACGCGCGACGAGAAGGACCGGTTCTTCCGCGCCATCGAGGAGCTCA
ACCGCGCGGGCAGCCCGGACCAGGTGTTCGTGGCGGTGCTGGAGAGCACCCGGCAGCTCGCGGGCCTGGACTTCTGTGCG
GTGACGCTGGTGTCCGAGGTCGACGGCAAGCGCATGCACCGCGTGGTGCGCATGTCCGGCGTGACGGCGCAGGGCCAGGC
GCTGTCCGGCCAGAGTTTCGAGGACAACAACGGGCTGGTGGCCAACGTGGTCCGCTACGGGGCGCCGCTGCCGGGCCGCG
ACATCAAGGCGATGGACCGGCAGATCATCTTCGACGACGAGACGCAGATTCGCGGCCTGGGTGCGCTGAAGATCTTCCCG
CTGGTGGCGGGGGACCGCATCCTGGGCACGCTGGTGGCCGGCTCGCGCAAGAAGGCCGCGTTCGAGCAGGACGTGCTGCG
GATGATTGAGGTCATCGCCATCCAGGCCGCGCAGGCGGTGCTGCGCGCGCAGCTCTACGAGCAGATGGAGCGCATGGCCA
CCACGGACGGCCTCACCGGCCTGTACAACCACCGCACCTTCCAGGCGAAGGCGGACGAGGTGCTGGCCCAGTCCCGGCGC
TACCAGCGCAAGTTCTCGCTCATCCTCACGGACGTGGACCACTTCAAGAGCGTCAACGACACCTACGGCCACCCGACGGG
CGACCAGGTGCTCAAGGGCGTGGCCCGCATCATCAAGACGATGGCGCGCGATACGGACATCGTCGCCCGCTACGGCGGCG
AGGAGTTCGTCATCATCATGCCGGAGACGGACGCCAAGGGCGCCTTCACCATCTCCGAGCGCATCCGCGAGGCCGTGAAG
GCGGAGGTGTTCCAGACGGAGATGGGGCCGCTGAGGATCACCATGTCGCTGGGCATCGCCACGTTCCCCGACAGTGCCAT
GGAGAAGCAGCAGCTCATCGACCTGGCCGACCAGTGCCTCTACCACTCGAAGCGCAACGGCCGGAACCAGTCCGTCACCG
TGGACATCATGCAGGGAGGGCGCAAGCAGCTGAAGGCGGCGAACGCGTCCTGA

Upstream 100 bases:

>100_bases
GCGCCGTGCGTGAGGAGCTCGGCTTCGTGAAGCCGGGCGAGCTCGTCTTCCACCTGGAGTCCCCATGACGTCGCTTCCCG
AGTTTCCGTCTCCCGGAAGG

Downstream 100 bases:

>100_bases
GTCCTTGATGCAGCCGGGGGCCGCCCATGACGCGCGGCCCCCGGGCGTTGCCTTCAGCGGATTACAGCGAGCGCAGGAAC
GTCAGCAGCGCGTTGCGGTC

Product: GAF domain/GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 710; Mature: 710

Protein sequence:

>710_residues
MLRLAVRSIPAAASLATFIHLARGGFRGLNTLGWTEAALVGCLLVGIAVAAWRRAMRGAVGAIVDLRDDLDLGGTLISAA
FVVVAIGGGDLFPIVYLLMAFLVAFLPRNAGLTLLGVALVYDALVTLGGPVPNATGYLTHAAFLALFSGLYHLVLAARIA
AARRAESDAVQKRIREVEERARTFRLVSSGTQDSFSGMSSDEKWLVASVKEIEGAVQAALEIAETGLRTYTCAAFLLTSD
DRSLKLYDCRSGSERVQRERFNAGEGIIGGVLKRRAPVRMNSPNGLKGVTHYEGSGPAVQALLAVPILEASGLVRGVLVA
DRLANEPFSDQDEKLLSTIAGEVLRSIEVERVMSYIRKTRDEKDRFFRAIEELNRAGSPDQVFVAVLESTRQLAGLDFCA
VTLVSEVDGKRMHRVVRMSGVTAQGQALSGQSFEDNNGLVANVVRYGAPLPGRDIKAMDRQIIFDDETQIRGLGALKIFP
LVAGDRILGTLVAGSRKKAAFEQDVLRMIEVIAIQAAQAVLRAQLYEQMERMATTDGLTGLYNHRTFQAKADEVLAQSRR
YQRKFSLILTDVDHFKSVNDTYGHPTGDQVLKGVARIIKTMARDTDIVARYGGEEFVIIMPETDAKGAFTISERIREAVK
AEVFQTEMGPLRITMSLGIATFPDSAMEKQQLIDLADQCLYHSKRNGRNQSVTVDIMQGGRKQLKAANAS

Sequences:

>Translated_710_residues
MLRLAVRSIPAAASLATFIHLARGGFRGLNTLGWTEAALVGCLLVGIAVAAWRRAMRGAVGAIVDLRDDLDLGGTLISAA
FVVVAIGGGDLFPIVYLLMAFLVAFLPRNAGLTLLGVALVYDALVTLGGPVPNATGYLTHAAFLALFSGLYHLVLAARIA
AARRAESDAVQKRIREVEERARTFRLVSSGTQDSFSGMSSDEKWLVASVKEIEGAVQAALEIAETGLRTYTCAAFLLTSD
DRSLKLYDCRSGSERVQRERFNAGEGIIGGVLKRRAPVRMNSPNGLKGVTHYEGSGPAVQALLAVPILEASGLVRGVLVA
DRLANEPFSDQDEKLLSTIAGEVLRSIEVERVMSYIRKTRDEKDRFFRAIEELNRAGSPDQVFVAVLESTRQLAGLDFCA
VTLVSEVDGKRMHRVVRMSGVTAQGQALSGQSFEDNNGLVANVVRYGAPLPGRDIKAMDRQIIFDDETQIRGLGALKIFP
LVAGDRILGTLVAGSRKKAAFEQDVLRMIEVIAIQAAQAVLRAQLYEQMERMATTDGLTGLYNHRTFQAKADEVLAQSRR
YQRKFSLILTDVDHFKSVNDTYGHPTGDQVLKGVARIIKTMARDTDIVARYGGEEFVIIMPETDAKGAFTISERIREAVK
AEVFQTEMGPLRITMSLGIATFPDSAMEKQQLIDLADQCLYHSKRNGRNQSVTVDIMQGGRKQLKAANAS
>Mature_710_residues
MLRLAVRSIPAAASLATFIHLARGGFRGLNTLGWTEAALVGCLLVGIAVAAWRRAMRGAVGAIVDLRDDLDLGGTLISAA
FVVVAIGGGDLFPIVYLLMAFLVAFLPRNAGLTLLGVALVYDALVTLGGPVPNATGYLTHAAFLALFSGLYHLVLAARIA
AARRAESDAVQKRIREVEERARTFRLVSSGTQDSFSGMSSDEKWLVASVKEIEGAVQAALEIAETGLRTYTCAAFLLTSD
DRSLKLYDCRSGSERVQRERFNAGEGIIGGVLKRRAPVRMNSPNGLKGVTHYEGSGPAVQALLAVPILEASGLVRGVLVA
DRLANEPFSDQDEKLLSTIAGEVLRSIEVERVMSYIRKTRDEKDRFFRAIEELNRAGSPDQVFVAVLESTRQLAGLDFCA
VTLVSEVDGKRMHRVVRMSGVTAQGQALSGQSFEDNNGLVANVVRYGAPLPGRDIKAMDRQIIFDDETQIRGLGALKIFP
LVAGDRILGTLVAGSRKKAAFEQDVLRMIEVIAIQAAQAVLRAQLYEQMERMATTDGLTGLYNHRTFQAKADEVLAQSRR
YQRKFSLILTDVDHFKSVNDTYGHPTGDQVLKGVARIIKTMARDTDIVARYGGEEFVIIMPETDAKGAFTISERIREAVK
AEVFQTEMGPLRITMSLGIATFPDSAMEKQQLIDLADQCLYHSKRNGRNQSVTVDIMQGGRKQLKAANAS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=198, Percent_Identity=33.8383838383838, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=34.1176470588235, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=38.4615384615385, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=34.2857142857143, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=35.4651162790698, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=35.8381502890173, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1788381, Length=184, Percent_Identity=30.4347826086957, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=34.7560975609756, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI87081977, Length=251, Percent_Identity=24.3027888446215, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=31.3609467455621, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788085, Length=191, Percent_Identity=29.3193717277487, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787056, Length=125, Percent_Identity=37.6, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI87081974, Length=174, Percent_Identity=29.8850574712644, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=30.9090909090909, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 77178; Mature: 77178

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLAVRSIPAAASLATFIHLARGGFRGLNTLGWTEAALVGCLLVGIAVAAWRRAMRGAV
CCEEHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAIVDLRDDLDLGGTLISAAFVVVAIGGGDLFPIVYLLMAFLVAFLPRNAGLTLLGVALV
HHHHCCCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YDALVTLGGPVPNATGYLTHAAFLALFSGLYHLVLAARIAAARRAESDAVQKRIREVEER
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ARTFRLVSSGTQDSFSGMSSDEKWLVASVKEIEGAVQAALEIAETGLRTYTCAAFLLTSD
HHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEECC
DRSLKLYDCRSGSERVQRERFNAGEGIIGGVLKRRAPVRMNSPNGLKGVTHYEGSGPAVQ
CCCEEEEECCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHH
ALLAVPILEASGLVRGVLVADRLANEPFSDQDEKLLSTIAGEVLRSIEVERVMSYIRKTR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DEKDRFFRAIEELNRAGSPDQVFVAVLESTRQLAGLDFCAVTLVSEVDGKRMHRVVRMSG
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHCC
VTAQGQALSGQSFEDNNGLVANVVRYGAPLPGRDIKAMDRQIIFDDETQIRGLGALKIFP
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCEEEECCCHHHCCCCCCEEEH
LVAGDRILGTLVAGSRKKAAFEQDVLRMIEVIAIQAAQAVLRAQLYEQMERMATTDGLTG
HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LYNHRTFQAKADEVLAQSRRYQRKFSLILTDVDHFKSVNDTYGHPTGDQVLKGVARIIKT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
MARDTDIVARYGGEEFVIIMPETDAKGAFTISERIREAVKAEVFQTEMGPLRITMSLGIA
HHCCHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCE
TFPDSAMEKQQLIDLADQCLYHSKRNGRNQSVTVDIMQGGRKQLKAANAS
ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHCCHHHHHCCCCC
>Mature Secondary Structure
MLRLAVRSIPAAASLATFIHLARGGFRGLNTLGWTEAALVGCLLVGIAVAAWRRAMRGAV
CCEEHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAIVDLRDDLDLGGTLISAAFVVVAIGGGDLFPIVYLLMAFLVAFLPRNAGLTLLGVALV
HHHHCCCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YDALVTLGGPVPNATGYLTHAAFLALFSGLYHLVLAARIAAARRAESDAVQKRIREVEER
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ARTFRLVSSGTQDSFSGMSSDEKWLVASVKEIEGAVQAALEIAETGLRTYTCAAFLLTSD
HHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEECC
DRSLKLYDCRSGSERVQRERFNAGEGIIGGVLKRRAPVRMNSPNGLKGVTHYEGSGPAVQ
CCCEEEEECCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHH
ALLAVPILEASGLVRGVLVADRLANEPFSDQDEKLLSTIAGEVLRSIEVERVMSYIRKTR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DEKDRFFRAIEELNRAGSPDQVFVAVLESTRQLAGLDFCAVTLVSEVDGKRMHRVVRMSG
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHCC
VTAQGQALSGQSFEDNNGLVANVVRYGAPLPGRDIKAMDRQIIFDDETQIRGLGALKIFP
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCEEEECCCHHHCCCCCCEEEH
LVAGDRILGTLVAGSRKKAAFEQDVLRMIEVIAIQAAQAVLRAQLYEQMERMATTDGLTG
HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LYNHRTFQAKADEVLAQSRRYQRKFSLILTDVDHFKSVNDTYGHPTGDQVLKGVARIIKT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
MARDTDIVARYGGEEFVIIMPETDAKGAFTISERIREAVKAEVFQTEMGPLRITMSLGIA
HHCCHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCE
TFPDSAMEKQQLIDLADQCLYHSKRNGRNQSVTVDIMQGGRKQLKAANAS
ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]