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The map label for this gene is ydeS [H]

Identifier: 108763577

GI number: 108763577

Start: 1985185

End: 1985709

Strand: Direct

Name: ydeS [H]

Synonym: MXAN_1677

Alternate gene names: 108763577

Gene position: 1985185-1985709 (Clockwise)

Preceding gene: 108757193

Following gene: 108758175

Centisome position: 21.72

GC content: 69.71

Gene sequence:

>525_bases
ATGCGGACGGGACGACCCAGGGATGAAAAAGTGCGCCTGGCCATTCTCACGGCGGCGCAGGAACTGGTGCTGGAGAAGGG
CTATGCGGCGGTGACGACCGCCGACGTGGCGGAGCGCGCGGGGGCTGGGAAGCAGACCATCTACCGTTGGTGGCCGGGCA
AGGGGGCGCTGGTGCTCGACGCGTTCTCCGAATGGGTGAGTCAGGCGCCCCGCATGAACCGGCGCAAGCCTTCCCTGTCC
TCGACGCTGGTGGAGTTCTGCCGGGGGGCCGCGGAGGCGGCGCCCGTGCTGCGAGCGCTGATGGCGGAGGCACAATTCGA
CGAGGACCTCCACCGGCGGCTCATCGCCCAACTGGTGCGCCCGCGGGGTGACGAGCTCCGGGCGTGCCTCGCCGATCGCC
GGCCCGCCGACCGGGAGCTCGTGGTCAACGTGCTCTCCGGCCTGGTATGGCAGCGCCTCATGCTCAATGAGCCACTGGAC
GCACGTTTCGTGCGCTTCGCGCTGCGGGTGGTTCAGCGCATCTGA

Upstream 100 bases:

>100_bases
CGCGCGGGTTACGCAGGTGCGCACTGCGTTACGCGATTTCGGAACCGCCGGTCTCGTAAGTGGGTTGTTTCCGAGACCCG
AAGTCTCGTAAAGGCGAGTC

Downstream 100 bases:

>100_bases
GGCGGGCGGCTCTGTTGGGGGCCAACCGGGGAGGCGTGGAACGCGGTGGCGGCTCGCGGTCCTCCTGTGCTAGCTAGCCC
GGAGCCACTTGACGCTCCGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MRTGRPRDEKVRLAILTAAQELVLEKGYAAVTTADVAERAGAGKQTIYRWWPGKGALVLDAFSEWVSQAPRMNRRKPSLS
STLVEFCRGAAEAAPVLRALMAEAQFDEDLHRRLIAQLVRPRGDELRACLADRRPADRELVVNVLSGLVWQRLMLNEPLD
ARFVRFALRVVQRI

Sequences:

>Translated_174_residues
MRTGRPRDEKVRLAILTAAQELVLEKGYAAVTTADVAERAGAGKQTIYRWWPGKGALVLDAFSEWVSQAPRMNRRKPSLS
STLVEFCRGAAEAAPVLRALMAEAQFDEDLHRRLIAQLVRPRGDELRACLADRRPADRELVVNVLSGLVWQRLMLNEPLD
ARFVRFALRVVQRI
>Mature_174_residues
MRTGRPRDEKVRLAILTAAQELVLEKGYAAVTTADVAERAGAGKQTIYRWWPGKGALVLDAFSEWVSQAPRMNRRKPSLS
STLVEFCRGAAEAAPVLRALMAEAQFDEDLHRRLIAQLVRPRGDELRACLADRRPADRELVVNVLSGLVWQRLMLNEPLD
ARFVRFALRVVQRI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 19632; Mature: 19632

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTGRPRDEKVRLAILTAAQELVLEKGYAAVTTADVAERAGAGKQTIYRWWPGKGALVLD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHH
AFSEWVSQAPRMNRRKPSLSSTLVEFCRGAAEAAPVLRALMAEAQFDEDLHRRLIAQLVR
HHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
PRGDELRACLADRRPADRELVVNVLSGLVWQRLMLNEPLDARFVRFALRVVQRI
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MRTGRPRDEKVRLAILTAAQELVLEKGYAAVTTADVAERAGAGKQTIYRWWPGKGALVLD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHH
AFSEWVSQAPRMNRRKPSLSSTLVEFCRGAAEAAPVLRALMAEAQFDEDLHRRLIAQLVR
HHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
PRGDELRACLADRRPADRELVVNVLSGLVWQRLMLNEPLDARFVRFALRVVQRI
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]