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The map label for this gene is rcaC [H]

Identifier: 108763514

GI number: 108763514

Start: 5828570

End: 5828974

Strand: Reverse

Name: rcaC [H]

Synonym: MXAN_4645

Alternate gene names: 108763514

Gene position: 5828974-5828570 (Counterclockwise)

Preceding gene: 108757657

Following gene: 108759145

Centisome position: 63.78

GC content: 63.95

Gene sequence:

>405_bases
GTGCTCGGGCGCGTCCATTCCGGCATGTCGAAGCTGAAAATCACCATTGTCGATGATGACCGCGACACGCGGGAGCTGCT
GGCGGCGGCCCTGGAGTACGAAGGCTTCGCCGTCACCATGGCGGCCAACGGCCTGCGGCTCATCGCGTCGCTCCAACTGC
ACCGGCCGCATGCCATCCTCCTGGACGTGAACATGTCCTGGATTGATGGCTTCGAGCTGTGCCGGGCGGTGAAGAAGAAC
GAGCAGTTCCGGGACATTCCCGTCATCTTCATCAGTGGCCGCGGGGAGCCCGAGGACAAGCGGCACGGCATGGCGGTGGG
CGCCGCGGACTACTTCGTCAAGCCGCTGGACATGGACAAGCTCGTCAGCCGCATTCGCGAGCTTGTGCCCGCGCAGATTC
CATAA

Upstream 100 bases:

>100_bases
GGCGCCCCTGTCGGTCGCCGCGCGTCCGGCGGCGCCCGCGCCCGCGGCCCCTCGGGCCCCTACTCCTCGCCCGCCCCCGG
AGGATGACGTCCCGTTCTAG

Downstream 100 bases:

>100_bases
GAGGAGCACGGACGCTCGTGGCAACGTTTCAACTGAACTCCTTCCTGGCCGCTCAGCAGGCGCGCGTCGAGGCCCTGCTG
AACGAGCGCGTGGCGCGGCT

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MLGRVHSGMSKLKITIVDDDRDTRELLAAALEYEGFAVTMAANGLRLIASLQLHRPHAILLDVNMSWIDGFELCRAVKKN
EQFRDIPVIFISGRGEPEDKRHGMAVGAADYFVKPLDMDKLVSRIRELVPAQIP

Sequences:

>Translated_134_residues
MLGRVHSGMSKLKITIVDDDRDTRELLAAALEYEGFAVTMAANGLRLIASLQLHRPHAILLDVNMSWIDGFELCRAVKKN
EQFRDIPVIFISGRGEPEDKRHGMAVGAADYFVKPLDMDKLVSRIRELVPAQIP
>Mature_134_residues
MLGRVHSGMSKLKITIVDDDRDTRELLAAALEYEGFAVTMAANGLRLIASLQLHRPHAILLDVNMSWIDGFELCRAVKKN
EQFRDIPVIFISGRGEPEDKRHGMAVGAADYFVKPLDMDKLVSRIRELVPAQIP

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=114, Percent_Identity=34.2105263157895, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1790860, Length=121, Percent_Identity=32.2314049586777, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1789809, Length=120, Percent_Identity=34.1666666666667, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1788394, Length=117, Percent_Identity=29.9145299145299, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787229, Length=116, Percent_Identity=32.7586206896552, Blast_Score=66, Evalue=7e-13,
Organism=Escherichia coli, GI1788550, Length=112, Percent_Identity=33.0357142857143, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1786784, Length=118, Percent_Identity=29.6610169491525, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1786911, Length=114, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1790863, Length=121, Percent_Identity=29.7520661157025, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI2367329, Length=117, Percent_Identity=37.6068376068376, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 15013; Mature: 15013

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGRVHSGMSKLKITIVDDDRDTRELLAAALEYEGFAVTMAANGLRLIASLQLHRPHAIL
CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCEEEE
LDVNMSWIDGFELCRAVKKNEQFRDIPVIFISGRGEPEDKRHGMAVGAADYFVKPLDMDK
EECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHCCEEEECHHHEECCCCHHH
LVSRIRELVPAQIP
HHHHHHHHCCCCCC
>Mature Secondary Structure
MLGRVHSGMSKLKITIVDDDRDTRELLAAALEYEGFAVTMAANGLRLIASLQLHRPHAIL
CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCEEEE
LDVNMSWIDGFELCRAVKKNEQFRDIPVIFISGRGEPEDKRHGMAVGAADYFVKPLDMDK
EECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHCCEEEECHHHEECCCCHHH
LVSRIRELVPAQIP
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]