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The map label for this gene is rtcB [C]

Identifier: 108763429

GI number: 108763429

Start: 1783900

End: 1785324

Strand: Direct

Name: rtcB [C]

Synonym: MXAN_1521

Alternate gene names: 108763429

Gene position: 1783900-1785324 (Clockwise)

Preceding gene: 108761429

Following gene: 108758591

Centisome position: 19.52

GC content: 72.42

Gene sequence:

>1425_bases
ATGCAGCCGAAACTGAACCGGCTTCTCCGGGCGCTCGCCCGCGAGGGGCTCGAGGTCGCCTATGACGGCCGCCTCTATTC
CGTCCGCCTCCTGGGTGACGCTCACGCGCCGCCCGCCGAAGTCCTTCTCCCGCCGGACCTGCCCGTGGAGGGCAAGGCCT
TCCAACAACTCGCCCAGCTCGCGGCCCTGAGGCACCCCGGTGGTGGCGAGGTGCTGCGGGTACGTGCCACGCCCGACTTC
CACCCGGGAGACTCCGGGGTGGCCATTGGCTCGGTGCTCCACACGCGCGGGCTGGTGGTGCCCGGCGCCATTGGCACCGA
CATCAACTGCGGCATGCGGCTGCACGTCGCGGACATCTCCGTGGAGGACTTTCTGGCGAAGCGGTCGGCCTTCGTCGAGC
GGATGAAGGGCCACTACTTCTTCGGTACGCGTGACGTCACCATGGCCTCACGGGCCTCCGAGGCGCTGCTGCGCGACGGC
GTGCAGGGCTGGCTCCTGGAGACGCTGGAGCAGCCGCTGGGGTGCGCGGGACGGGCCGACCTGGCCCAGCTCGACGCGGA
GGTGTCGCGCATCCACCTGGGCGGCGGGCTGAAGGGCCATCCGCGCTGGGCGCCCGAGTCCTTCACGCGCGAAGGGCTGG
TGCGCGACGCGGGCCTGGCCACCATTGGCGGCGGCAACCACTTCGTGGAGGTGCAGCGCGTGGAGGCTGTGGAGGACCGG
GCGCGGGCGTGGGACTGGGGCGTGCGCGAGGGACAGCTCGCGTTCATGATTCACTCTGGCAGCCGGGACGTGGGCAAGCA
CGTGGGCGTGGCCTGGCAGGACCGTGCGCGCCAGGCGTGGCCCGCGGGAACGCCGCTTCCGGCCAGCGGCATCCTCCCCC
TGGGGGATGCGCGGCTCGTCACCGAATACCTGGAGGCGGAGGCGACGGCGGCCAACTACGCCTTCCTCAACCGCCTGCTG
CTGGCGGAACTGCTGCGCCAGACGCTCAGGGAGCTCTTCGGGGACGTGGAGGCGCCGCTCGTCTACGACGTGCCCCACAA
CCTGACGCTGCCCTACGAGGGCGGCTGGCTGGCGCGCAAGGGCGCATGCCCGGCGGGGGCGGAGCAACCCGTCATCATCC
CCGGCTCCATGGGGGCCACGTCCTTCCTCATGGTGGGGTGTGGGGATGCGCGGGCGCTGGAGTCCGCGTCGCACGGCGCG
GGCCGCGCGCGCTCCCGCTTCTCCCTGTCGCGGGGCGGCGCGGACCAGAGCGAGGCCGCCCTGGGGCTGACCGGCGTGGA
CTGCATCACCCTTCGCGCGGAGCGTCGCGTCGAGGAGGCGCCCGCAGCATACAAGCCCATCCGTCCGGTGGTGGATGCCC
AGGTGGAGGCCGGCATCGTCCGGGAGGTCGCCCGGCTCTCCCCCCTGCTCACCTTCAAGGCCTGA

Upstream 100 bases:

>100_bases
GTCTGGCGACCGCGGCTGCTGACCCCTGGTCCCTCATCTCTCCGTCACGTCCCCCTGGGTGTGCCCGTCTTCGGGCCCCG
GGGCATTCCTGAGTTGGGTC

Downstream 100 bases:

>100_bases
GCGGGGAGGGAAGGGGGGCACGTCATTTCACTTGGCGTGCTCCCCTGTCTGCGAGTGGAATGGCCGCGCGGCGGGCCCAT
TGCCCGCACGGCATCTCACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MQPKLNRLLRALAREGLEVAYDGRLYSVRLLGDAHAPPAEVLLPPDLPVEGKAFQQLAQLAALRHPGGGEVLRVRATPDF
HPGDSGVAIGSVLHTRGLVVPGAIGTDINCGMRLHVADISVEDFLAKRSAFVERMKGHYFFGTRDVTMASRASEALLRDG
VQGWLLETLEQPLGCAGRADLAQLDAEVSRIHLGGGLKGHPRWAPESFTREGLVRDAGLATIGGGNHFVEVQRVEAVEDR
ARAWDWGVREGQLAFMIHSGSRDVGKHVGVAWQDRARQAWPAGTPLPASGILPLGDARLVTEYLEAEATAANYAFLNRLL
LAELLRQTLRELFGDVEAPLVYDVPHNLTLPYEGGWLARKGACPAGAEQPVIIPGSMGATSFLMVGCGDARALESASHGA
GRARSRFSLSRGGADQSEAALGLTGVDCITLRAERRVEEAPAAYKPIRPVVDAQVEAGIVREVARLSPLLTFKA

Sequences:

>Translated_474_residues
MQPKLNRLLRALAREGLEVAYDGRLYSVRLLGDAHAPPAEVLLPPDLPVEGKAFQQLAQLAALRHPGGGEVLRVRATPDF
HPGDSGVAIGSVLHTRGLVVPGAIGTDINCGMRLHVADISVEDFLAKRSAFVERMKGHYFFGTRDVTMASRASEALLRDG
VQGWLLETLEQPLGCAGRADLAQLDAEVSRIHLGGGLKGHPRWAPESFTREGLVRDAGLATIGGGNHFVEVQRVEAVEDR
ARAWDWGVREGQLAFMIHSGSRDVGKHVGVAWQDRARQAWPAGTPLPASGILPLGDARLVTEYLEAEATAANYAFLNRLL
LAELLRQTLRELFGDVEAPLVYDVPHNLTLPYEGGWLARKGACPAGAEQPVIIPGSMGATSFLMVGCGDARALESASHGA
GRARSRFSLSRGGADQSEAALGLTGVDCITLRAERRVEEAPAAYKPIRPVVDAQVEAGIVREVARLSPLLTFKA
>Mature_474_residues
MQPKLNRLLRALAREGLEVAYDGRLYSVRLLGDAHAPPAEVLLPPDLPVEGKAFQQLAQLAALRHPGGGEVLRVRATPDF
HPGDSGVAIGSVLHTRGLVVPGAIGTDINCGMRLHVADISVEDFLAKRSAFVERMKGHYFFGTRDVTMASRASEALLRDG
VQGWLLETLEQPLGCAGRADLAQLDAEVSRIHLGGGLKGHPRWAPESFTREGLVRDAGLATIGGGNHFVEVQRVEAVEDR
ARAWDWGVREGQLAFMIHSGSRDVGKHVGVAWQDRARQAWPAGTPLPASGILPLGDARLVTEYLEAEATAANYAFLNRLL
LAELLRQTLRELFGDVEAPLVYDVPHNLTLPYEGGWLARKGACPAGAEQPVIIPGSMGATSFLMVGCGDARALESASHGA
GRARSRFSLSRGGADQSEAALGLTGVDCITLRAERRVEEAPAAYKPIRPVVDAQVEAGIVREVARLSPLLTFKA

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=463, Percent_Identity=28.7257019438445, Blast_Score=129, Evalue=7e-30,
Organism=Escherichia coli, GI2367224, Length=450, Percent_Identity=28.4444444444444, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17506665, Length=474, Percent_Identity=28.0590717299578, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24585217, Length=464, Percent_Identity=28.6637931034483, Blast_Score=120, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 50819; Mature: 50819

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPKLNRLLRALAREGLEVAYDGRLYSVRLLGDAHAPPAEVLLPPDLPVEGKAFQQLAQL
CCHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCCCCCCEEECCCCCCCCHHHHHHHHH
AALRHPGGGEVLRVRATPDFHPGDSGVAIGSVLHTRGLVVPGAIGTDINCGMRLHVADIS
HHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCEEEEEECCC
VEDFLAKRSAFVERMKGHYFFGTRDVTMASRASEALLRDGVQGWLLETLEQPLGCAGRAD
HHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCH
LAQLDAEVSRIHLGGGLKGHPRWAPESFTREGLVRDAGLATIGGGNHFVEVQRVEAVEDR
HHHHHHHHHEEEECCCCCCCCCCCCHHHHHHCCHHCCCEEEECCCCEEEEEHHHHHHHHH
ARAWDWGVREGQLAFMIHSGSRDVGKHVGVAWQDRARQAWPAGTPLPASGILPLGDARLV
HHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH
TEYLEAEATAANYAFLNRLLLAELLRQTLRELFGDVEAPLVYDVPHNLTLPYEGGWLARK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCEEEEC
GACPAGAEQPVIIPGSMGATSFLMVGCGDARALESASHGAGRARSRFSLSRGGADQSEAA
CCCCCCCCCCEEEECCCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCE
LGLTGVDCITLRAERRVEEAPAAYKPIRPVVDAQVEAGIVREVARLSPLLTFKA
ECCCCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MQPKLNRLLRALAREGLEVAYDGRLYSVRLLGDAHAPPAEVLLPPDLPVEGKAFQQLAQL
CCHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCCCCCCEEECCCCCCCCHHHHHHHHH
AALRHPGGGEVLRVRATPDFHPGDSGVAIGSVLHTRGLVVPGAIGTDINCGMRLHVADIS
HHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCEEEEEECCC
VEDFLAKRSAFVERMKGHYFFGTRDVTMASRASEALLRDGVQGWLLETLEQPLGCAGRAD
HHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCH
LAQLDAEVSRIHLGGGLKGHPRWAPESFTREGLVRDAGLATIGGGNHFVEVQRVEAVEDR
HHHHHHHHHEEEECCCCCCCCCCCCHHHHHHCCHHCCCEEEECCCCEEEEEHHHHHHHHH
ARAWDWGVREGQLAFMIHSGSRDVGKHVGVAWQDRARQAWPAGTPLPASGILPLGDARLV
HHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH
TEYLEAEATAANYAFLNRLLLAELLRQTLRELFGDVEAPLVYDVPHNLTLPYEGGWLARK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCEEEEC
GACPAGAEQPVIIPGSMGATSFLMVGCGDARALESASHGAGRARSRFSLSRGGADQSEAA
CCCCCCCCCCEEEECCCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCE
LGLTGVDCITLRAERRVEEAPAAYKPIRPVVDAQVEAGIVREVARLSPLLTFKA
ECCCCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11792869 [H]