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The map label for this gene is virS [H]

Identifier: 108763160

GI number: 108763160

Start: 1323913

End: 1324959

Strand: Reverse

Name: virS [H]

Synonym: MXAN_1137

Alternate gene names: 108763160

Gene position: 1324959-1323913 (Counterclockwise)

Preceding gene: 108762169

Following gene: 108762919

Centisome position: 14.5

GC content: 73.73

Gene sequence:

>1047_bases
GTGGAGACGCCGCCCCCTTCCCGGCCACCAACCGACGTCCGCTCCCAGCTCGTGGGACCGATGCTCGCCTACCTGCGCGC
GACGGGGCGCGACCCGTCCCCTCTGGTGGAGCGCTTCGGGCTTCCCGCCAACGCGAGCGCGCTGCCCGAAGTCACCCTCC
CGCTGGCCACCCTGCACGCCTTCCTCGACGCGGCCGAGGCCCTGTCCGGAGACGCCTTCCTCGGCCTGCACGTGGCGCAG
CGAGTCCCGCGCGGAAACTACGGACTGGTGGAGTACATCGCCCGGGCCTCCCCCACCGTCCGCGACACCTTCCGCGCGCT
GGCCCGGTACATGGCGCTGCTGGAGCCCGCCTGGCGCGCCTCCTTCCAGGACGCACCGGACGGCAGCGGCACCTTCGTCT
ACGGCATCCCCGGCGAGCCCCTGGCCTACGGCCGCCACGCCAGCGAGTTCGGACTGGCCCTCTTCGTCCATGTCGGGCGC
CAGCTCACCGAACACCCGTGGAATCCGCGCCACGTCTCCTTCGCCCACCCCGCCCCCGCGGACCTCCGCCCGCTCGAGCA
GCACTTTGGCGTCACCCCGGCGTTCGACGCGGGCCGCAACGCCCTGACGCTGGACGCGGCCACGCTCGCGCTGCGCGTGG
TGGATGCGGACCCCGTCCTCCTGTCCGTCCTGGAGCGCGCCGCTGGCACCCCCGCCGCCGAGCCACCGTCGGTGCCCCGC
ACGCCCCCCTTCCTGCAACAGGTCCGCGACGCCCTCCGCGCCTCCCTGCGGAACGGAGCGCCGCAGATGGGCGACGTGGC
CCGGCAGCTCCACGTCAGCCCCCGCACCCTCCAGCGCCGGCTCGCCGAGCACGCCACGTCCTTCCAGGACGAGGTCGACG
CAGTGCGCCGTGAGCTGGCCTTCGACTACCTGAGGGACGCGCACCTGGGGGTCAGCGAGGTGGCCTTCCTCCTGGGGTAT
TCGGAGCTGAGCACCTTCGACCGCGCCTTCAAGCGGTGGACGGGCATGACGCCCCGCGTCTGGCGCGAAAGGCCCGAAGC
GGGCTGA

Upstream 100 bases:

>100_bases
GCCAGATTGTCCATGCCCCCACTCTAGGCCTGCCCGCACCGTCCAGCGCCTCTCCAGGGTGGTGGGCCCCGCGCCCGAGA
CACGGTAGCGTCGCGCCCGC

Downstream 100 bases:

>100_bases
ACCCGGGTGGCGTGCTCGGCCAGGAGATTGGCGTCCGCGGCCAGGAAACCCGGCGCCACTTCCCCTACGCTGCGGAGCAT
CCACACCCCTTCGCTTCCGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
METPPPSRPPTDVRSQLVGPMLAYLRATGRDPSPLVERFGLPANASALPEVTLPLATLHAFLDAAEALSGDAFLGLHVAQ
RVPRGNYGLVEYIARASPTVRDTFRALARYMALLEPAWRASFQDAPDGSGTFVYGIPGEPLAYGRHASEFGLALFVHVGR
QLTEHPWNPRHVSFAHPAPADLRPLEQHFGVTPAFDAGRNALTLDAATLALRVVDADPVLLSVLERAAGTPAAEPPSVPR
TPPFLQQVRDALRASLRNGAPQMGDVARQLHVSPRTLQRRLAEHATSFQDEVDAVRRELAFDYLRDAHLGVSEVAFLLGY
SELSTFDRAFKRWTGMTPRVWRERPEAG

Sequences:

>Translated_348_residues
METPPPSRPPTDVRSQLVGPMLAYLRATGRDPSPLVERFGLPANASALPEVTLPLATLHAFLDAAEALSGDAFLGLHVAQ
RVPRGNYGLVEYIARASPTVRDTFRALARYMALLEPAWRASFQDAPDGSGTFVYGIPGEPLAYGRHASEFGLALFVHVGR
QLTEHPWNPRHVSFAHPAPADLRPLEQHFGVTPAFDAGRNALTLDAATLALRVVDADPVLLSVLERAAGTPAAEPPSVPR
TPPFLQQVRDALRASLRNGAPQMGDVARQLHVSPRTLQRRLAEHATSFQDEVDAVRRELAFDYLRDAHLGVSEVAFLLGY
SELSTFDRAFKRWTGMTPRVWRERPEAG
>Mature_348_residues
METPPPSRPPTDVRSQLVGPMLAYLRATGRDPSPLVERFGLPANASALPEVTLPLATLHAFLDAAEALSGDAFLGLHVAQ
RVPRGNYGLVEYIARASPTVRDTFRALARYMALLEPAWRASFQDAPDGSGTFVYGIPGEPLAYGRHASEFGLALFVHVGR
QLTEHPWNPRHVSFAHPAPADLRPLEQHFGVTPAFDAGRNALTLDAATLALRVVDADPVLLSVLERAAGTPAAEPPSVPR
TPPFLQQVRDALRASLRNGAPQMGDVARQLHVSPRTLQRRLAEHATSFQDEVDAVRRELAFDYLRDAHLGVSEVAFLLGY
SELSTFDRAFKRWTGMTPRVWRERPEAG

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38092; Mature: 38092

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METPPPSRPPTDVRSQLVGPMLAYLRATGRDPSPLVERFGLPANASALPEVTLPLATLHA
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
FLDAAEALSGDAFLGLHVAQRVPRGNYGLVEYIARASPTVRDTFRALARYMALLEPAWRA
HHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
SFQDAPDGSGTFVYGIPGEPLAYGRHASEFGLALFVHVGRQLTEHPWNPRHVSFAHPAPA
CCCCCCCCCCEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
DLRPLEQHFGVTPAFDAGRNALTLDAATLALRVVDADPVLLSVLERAAGTPAAEPPSVPR
CCHHHHHHCCCCCCCCCCCCEEEEHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCC
TPPFLQQVRDALRASLRNGAPQMGDVARQLHVSPRTLQRRLAEHATSFQDEVDAVRRELA
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDYLRDAHLGVSEVAFLLGYSELSTFDRAFKRWTGMTPRVWRERPEAG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
>Mature Secondary Structure
METPPPSRPPTDVRSQLVGPMLAYLRATGRDPSPLVERFGLPANASALPEVTLPLATLHA
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
FLDAAEALSGDAFLGLHVAQRVPRGNYGLVEYIARASPTVRDTFRALARYMALLEPAWRA
HHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
SFQDAPDGSGTFVYGIPGEPLAYGRHASEFGLALFVHVGRQLTEHPWNPRHVSFAHPAPA
CCCCCCCCCCEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
DLRPLEQHFGVTPAFDAGRNALTLDAATLALRVVDADPVLLSVLERAAGTPAAEPPSVPR
CCHHHHHHCCCCCCCCCCCCEEEEHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCC
TPPFLQQVRDALRASLRNGAPQMGDVARQLHVSPRTLQRRLAEHATSFQDEVDAVRRELA
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDYLRDAHLGVSEVAFLLGYSELSTFDRAFKRWTGMTPRVWRERPEAG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]