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The map label for this gene is cefD [H]

Identifier: 108762981

GI number: 108762981

Start: 6439889

End: 6441301

Strand: Reverse

Name: cefD [H]

Synonym: MXAN_5155

Alternate gene names: 108762981

Gene position: 6441301-6439889 (Counterclockwise)

Preceding gene: 108758775

Following gene: 108757075

Centisome position: 70.48

GC content: 65.04

Gene sequence:

>1413_bases
ATGTTCAAAGCCCCCGACTCCGACGGGGCCGCCAGCGCGGCCGAGTCCGTCGATTGCCGTCCCCTCATCACGTCACTGTC
CGACGTGGGGCTCCTTTCCAAGGAGCGAGGACGCGCGCTGACTGACAAGCTGAACCGCTTCTTTGAGGCGGTCCGTGCCC
CATCAAAGAAGACCGACGAGGCGTTCTGGACGGATTTCCAGCAGGAGTTTGGCTTCGCGACGGTCGCGCCCTCCGAGCGC
GTCACGCCGATGAACGCCGCCAACCTCTGCCCGGAGCCCACGGCGCTCATCGAGTCGCTCAACGAGCTGCGCCTCGAATA
CAACCTCAACGTCTCGCAACAGATGCGCACCGTGCAGGGCGAGCGGGTGCTCCAGTTGGAGCGGACGCGCAAGAGTCTGG
CCTTCGGCCTGGGCCTGAGCGACCCGACCGACCTCGCCATCGTGCGTAATGCCACGGAGGCGAACAACGCCATCAACTGC
GGCTTCCGGGGCTGGAGCGCGGACGGGAATGACACAGTGGTGATGTGGGCGGAGAACCATCCCACCAACCGCGAGGCCTG
GAAAATGCGAGCCGAGTGGCCCGGCGGCCCGACGCCCTTCAAGGTGGAGGAGGTGTCCTTCCCGACGAACGCCCCGGAGG
CGGACATCGCGACGGCCTTCATCAATCGAATCACCGAGCGCACGCGCTTCGTGACGTACACTGAGACGGCCAACAGCAAT
GGCTTCCGCATGCCCGAGTCGGTGATGCGCGCCATCTGGGCCCACGTGAAGACGAACCGGCCAAACTGCCATGTCCACAT
CGATGGCACGATGGCGTGGGGCGCGCGCCCGCTTGACCTGGCGAACGCGTACTGCCACAGCCTCGTCTCCAGCGCCCACA
AGTGGTTCCTGGGGCCCAAGGAGACGGGCATCCTCTTCATGCGCAAGGAGAAGGCCCGGAACTTCATGCCGAGCATCTTC
GGGTACGACTACCGCATCGTCATCGTGCCGTACCGGGAGCTGCCGGAGAACGCGCTGAGGTTCGAGCTCATCGGGCAGCG
CGACGACGTGAACATCATCGCGCTAGACCTCACCCAGAAGATGTGGACGGCGCTGCAACCGCGCAGACCTTACGAGCGGA
TCGCCCAACTCGCCCAGCACCTCATGTCACGGCTCCAGCAGACGGGGAGCCGGTGGAAGCTCGTCACGCCGAGCGACCCG
GCGCGCAGTTGGGGCGTGGTGCGCGTCGAGGCGCCGAAGGAGCACCGGGAGAAGACGCTGTACGACTGGCTCTACGAAGA
CCCGCGCTACCACATCGCGGGCTCCGGGGACGACAAGACGTTCCGCCTGTGCCCTCACATCTACAACACGATTGCTGATG
TGGACCGGGCCGTCGATGGGATGAATGCCTGGTACGATGACAAGCGTTTGTGA

Upstream 100 bases:

>100_bases
GGCATGTGTCCGGTCCCCGACTGCGCGGTGCCCTGCGGGGGGATGTCCCGGAGTCGGAACCAGGTGCACGGTGGCTGACC
CACTCCTTCCGGAGCGCCCC

Downstream 100 bases:

>100_bases
TGGGGGGCCGTGACGCTGCGCGCGACCGGGACGGGGGCCGCAAGCACTGCGGAGGGGCCGTGACAGGTGTGCCTACCCCA
AATTCGGTCGCTGCGTCATG

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MFKAPDSDGAASAAESVDCRPLITSLSDVGLLSKERGRALTDKLNRFFEAVRAPSKKTDEAFWTDFQQEFGFATVAPSER
VTPMNAANLCPEPTALIESLNELRLEYNLNVSQQMRTVQGERVLQLERTRKSLAFGLGLSDPTDLAIVRNATEANNAINC
GFRGWSADGNDTVVMWAENHPTNREAWKMRAEWPGGPTPFKVEEVSFPTNAPEADIATAFINRITERTRFVTYTETANSN
GFRMPESVMRAIWAHVKTNRPNCHVHIDGTMAWGARPLDLANAYCHSLVSSAHKWFLGPKETGILFMRKEKARNFMPSIF
GYDYRIVIVPYRELPENALRFELIGQRDDVNIIALDLTQKMWTALQPRRPYERIAQLAQHLMSRLQQTGSRWKLVTPSDP
ARSWGVVRVEAPKEHREKTLYDWLYEDPRYHIAGSGDDKTFRLCPHIYNTIADVDRAVDGMNAWYDDKRL

Sequences:

>Translated_470_residues
MFKAPDSDGAASAAESVDCRPLITSLSDVGLLSKERGRALTDKLNRFFEAVRAPSKKTDEAFWTDFQQEFGFATVAPSER
VTPMNAANLCPEPTALIESLNELRLEYNLNVSQQMRTVQGERVLQLERTRKSLAFGLGLSDPTDLAIVRNATEANNAINC
GFRGWSADGNDTVVMWAENHPTNREAWKMRAEWPGGPTPFKVEEVSFPTNAPEADIATAFINRITERTRFVTYTETANSN
GFRMPESVMRAIWAHVKTNRPNCHVHIDGTMAWGARPLDLANAYCHSLVSSAHKWFLGPKETGILFMRKEKARNFMPSIF
GYDYRIVIVPYRELPENALRFELIGQRDDVNIIALDLTQKMWTALQPRRPYERIAQLAQHLMSRLQQTGSRWKLVTPSDP
ARSWGVVRVEAPKEHREKTLYDWLYEDPRYHIAGSGDDKTFRLCPHIYNTIADVDRAVDGMNAWYDDKRL
>Mature_470_residues
MFKAPDSDGAASAAESVDCRPLITSLSDVGLLSKERGRALTDKLNRFFEAVRAPSKKTDEAFWTDFQQEFGFATVAPSER
VTPMNAANLCPEPTALIESLNELRLEYNLNVSQQMRTVQGERVLQLERTRKSLAFGLGLSDPTDLAIVRNATEANNAINC
GFRGWSADGNDTVVMWAENHPTNREAWKMRAEWPGGPTPFKVEEVSFPTNAPEADIATAFINRITERTRFVTYTETANSN
GFRMPESVMRAIWAHVKTNRPNCHVHIDGTMAWGARPLDLANAYCHSLVSSAHKWFLGPKETGILFMRKEKARNFMPSIF
GYDYRIVIVPYRELPENALRFELIGQRDDVNIIALDLTQKMWTALQPRRPYERIAQLAQHLMSRLQQTGSRWKLVTPSDP
ARSWGVVRVEAPKEHREKTLYDWLYEDPRYHIAGSGDDKTFRLCPHIYNTIADVDRAVDGMNAWYDDKRL

Specific function: Catalyzes the reversible isomerization between isopenicillin N and penicillin N [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =5.1.1.17 [H]

Molecular weight: Translated: 53459; Mature: 53459

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKAPDSDGAASAAESVDCRPLITSLSDVGLLSKERGRALTDKLNRFFEAVRAPSKKTDE
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCH
AFWTDFQQEFGFATVAPSERVTPMNAANLCPEPTALIESLNELRLEYNLNVSQQMRTVQG
HHHHHHHHHCCEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHEEEECCCHHHHHHHHCC
ERVLQLERTRKSLAFGLGLSDPTDLAIVRNATEANNAINCGFRGWSADGNDTVVMWAENH
HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEECCC
PTNREAWKMRAEWPGGPTPFKVEEVSFPTNAPEADIATAFINRITERTRFVTYTETANSN
CCCHHHEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCC
GFRMPESVMRAIWAHVKTNRPNCHVHIDGTMAWGARPLDLANAYCHSLVSSAHKWFLGPK
CCCCHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
ETGILFMRKEKARNFMPSIFGYDYRIVIVPYRELPENALRFELIGQRDDVNIIALDLTQK
CCCEEEEEHHHHHHCCHHHHCCCEEEEEEEHHHCCCCCEEEEEECCCCCCEEEEEECHHH
MWTALQPRRPYERIAQLAQHLMSRLQQTGSRWKLVTPSDPARSWGVVRVEAPKEHREKTL
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHH
YDWLYEDPRYHIAGSGDDKTFRLCPHIYNTIADVDRAVDGMNAWYDDKRL
HHHHHCCCCEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFKAPDSDGAASAAESVDCRPLITSLSDVGLLSKERGRALTDKLNRFFEAVRAPSKKTDE
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCH
AFWTDFQQEFGFATVAPSERVTPMNAANLCPEPTALIESLNELRLEYNLNVSQQMRTVQG
HHHHHHHHHCCEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHEEEECCCHHHHHHHHCC
ERVLQLERTRKSLAFGLGLSDPTDLAIVRNATEANNAINCGFRGWSADGNDTVVMWAENH
HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEECCC
PTNREAWKMRAEWPGGPTPFKVEEVSFPTNAPEADIATAFINRITERTRFVTYTETANSN
CCCHHHEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCC
GFRMPESVMRAIWAHVKTNRPNCHVHIDGTMAWGARPLDLANAYCHSLVSSAHKWFLGPK
CCCCHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
ETGILFMRKEKARNFMPSIFGYDYRIVIVPYRELPENALRFELIGQRDDVNIIALDLTQK
CCCEEEEEHHHHHHCCHHHHCCCEEEEEEEHHHCCCCCEEEEEECCCCCCEEEEEECHHH
MWTALQPRRPYERIAQLAQHLMSRLQQTGSRWKLVTPSDPARSWGVVRVEAPKEHREKTL
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHH
YDWLYEDPRYHIAGSGDDKTFRLCPHIYNTIADVDRAVDGMNAWYDDKRL
HHHHHCCCCEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1694525; 2804141 [H]