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The map label for this gene is pal [H]

Identifier: 108757075

GI number: 108757075

Start: 6435968

End: 6436717

Strand: Reverse

Name: pal [H]

Synonym: MXAN_5152

Alternate gene names: 108757075

Gene position: 6436717-6435968 (Counterclockwise)

Preceding gene: 108762981

Following gene: 108759985

Centisome position: 70.43

GC content: 69.47

Gene sequence:

>750_bases
ATGCGTCAGATTTCCCTTTTGGCGGGGCTCTCCCTCGCCGTCGCCATCATGGGCGGCTGCACCCCTTCCTATCCGAAGTG
CAACGAGGACGAGCACTGCGCGGAGAAGGGCGAAGTTTGCGTCCAGGGCCAGTGCCAGGAGTGCGCCACCGACGCCAACT
GCCAGGAGGGTTTCACCTGCCAGGCGAACAAGTGCGCCCCCAAGCCGCCTGAGTGCACCACGGACAGCGCTTGTGGCAGC
GGCCGCATCTGCGAGGCCGGCAAGTGCGCCGAGGCCCAGTGCCAGCAGGACACCCAGTGCCCCGGCGGCGGCAAGTGCGA
GTCCGGCCGTTGCCAGGTTCCCGAGAACACCTGCGCGTCCAGCTCTGACTGCGGCGAGGGCCAGGAGTGCCAGGCTGGCC
AGTGCGTGACGGCCTCCGCGGAGCGCTGCGACTGGAGCCCCGTCCCGTTCGGCTTCAACGAGTCCGGCCTGTCCGCGGAC
GCGCAGCAGCGCCTGTCCGACCTGGCTCAATGCATGAAGACCGCTCCGGGCCGCGTCACCCTGGCGGGCCATGCCGACGA
GCGCGGCACCGAGGAGTACAACCTCCAGCTCTCCAACCGCCGCGCGGCGTCCGTCAAGCGCTACCTGACGGACCTGGGCG
TGCCGGCCAGCCAGCTGGGCACGGTGGGTTATGGTGAGACCCGCCCGGTGAACTCCGCTTCGTCCGAAGACGCGTGGTCC
GAGAACCGCCGCGTCGAGTTCCAGCGCTAG

Upstream 100 bases:

>100_bases
GACAAATGTTTTGACTCACCCCCTCCAGTGAGACTACACGCCAACGACTACACCCCGCGGGCGCGGGCGCGTTTTCGACT
ACAGAATTCTGGAGGAAATA

Downstream 100 bases:

>100_bases
TCTGAGGTAGGCTGCGCGTGTGATGGCCGTCCAAGAGCCGGAAGCGCGTCAGTCCTATCTTGTCTTCGCCTGTGGCAGTA
GCTGGTATGCGGTACCCGCG

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MRQISLLAGLSLAVAIMGGCTPSYPKCNEDEHCAEKGEVCVQGQCQECATDANCQEGFTCQANKCAPKPPECTTDSACGS
GRICEAGKCAEAQCQQDTQCPGGGKCESGRCQVPENTCASSSDCGEGQECQAGQCVTASAERCDWSPVPFGFNESGLSAD
AQQRLSDLAQCMKTAPGRVTLAGHADERGTEEYNLQLSNRRAASVKRYLTDLGVPASQLGTVGYGETRPVNSASSEDAWS
ENRRVEFQR

Sequences:

>Translated_249_residues
MRQISLLAGLSLAVAIMGGCTPSYPKCNEDEHCAEKGEVCVQGQCQECATDANCQEGFTCQANKCAPKPPECTTDSACGS
GRICEAGKCAEAQCQQDTQCPGGGKCESGRCQVPENTCASSSDCGEGQECQAGQCVTASAERCDWSPVPFGFNESGLSAD
AQQRLSDLAQCMKTAPGRVTLAGHADERGTEEYNLQLSNRRAASVKRYLTDLGVPASQLGTVGYGETRPVNSASSEDAWS
ENRRVEFQR
>Mature_249_residues
MRQISLLAGLSLAVAIMGGCTPSYPKCNEDEHCAEKGEVCVQGQCQECATDANCQEGFTCQANKCAPKPPECTTDSACGS
GRICEAGKCAEAQCQQDTQCPGGGKCESGRCQVPENTCASSSDCGEGQECQAGQCVTASAERCDWSPVPFGFNESGLSAD
AQQRLSDLAQCMKTAPGRVTLAGHADERGTEEYNLQLSNRRAASVKRYLTDLGVPASQLGTVGYGETRPVNSASSEDAWS
ENRRVEFQR

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=42.8571428571429, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 26335; Mature: 26335

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
10.4 %Cys+Met (Translated Protein)
9.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
10.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQISLLAGLSLAVAIMGGCTPSYPKCNEDEHCAEKGEVCVQGQCQECATDANCQEGFTC
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEECCCHHHHCCCCCCCCCCEE
QANKCAPKPPECTTDSACGSGRICEAGKCAEAQCQQDTQCPGGGKCESGRCQVPENTCAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
SSDCGEGQECQAGQCVTASAERCDWSPVPFGFNESGLSADAQQRLSDLAQCMKTAPGRVT
CCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
LAGHADERGTEEYNLQLSNRRAASVKRYLTDLGVPASQLGTVGYGETRPVNSASSEDAWS
EECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHC
ENRRVEFQR
CCCEEECCC
>Mature Secondary Structure
MRQISLLAGLSLAVAIMGGCTPSYPKCNEDEHCAEKGEVCVQGQCQECATDANCQEGFTC
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEECCCHHHHCCCCCCCCCCEE
QANKCAPKPPECTTDSACGSGRICEAGKCAEAQCQQDTQCPGGGKCESGRCQVPENTCAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
SSDCGEGQECQAGQCVTASAERCDWSPVPFGFNESGLSADAQQRLSDLAQCMKTAPGRVT
CCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
LAGHADERGTEEYNLQLSNRRAASVKRYLTDLGVPASQLGTVGYGETRPVNSASSEDAWS
EECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHC
ENRRVEFQR
CCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]