| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is pdxA [H]
Identifier: 108762691
GI number: 108762691
Start: 530459
End: 531499
Strand: Reverse
Name: pdxA [H]
Synonym: MXAN_0467
Alternate gene names: 108762691
Gene position: 531499-530459 (Counterclockwise)
Preceding gene: 108758581
Following gene: 108758157
Centisome position: 5.82
GC content: 72.33
Gene sequence:
>1041_bases GTGGGCCTTCCGCACGTCGGAATCTCCCTGGGGGACGTGTCGGGCATCGGGCCGGAGGTGACGGCCGCGGCCCTGACGAA GCCCTCCGTGCGCAAGGTGCTCGTCCCCGTCATCTTCGGGGACGGGCCCACGCTGGCGCGCTTCCCCGCCTTCCGCCGCT ATGCCCGCGTGGAGCCCTCCGCCCTGGGCCGCGTGGAAGGCCCCACCGTGGTGGAGGTAACGCGGCTCGCGGAGAAGGAC CGCGTGCCCGGAGAGCCCTCGCGCGAGGGCGGCCGCGCGCAATACGCCTTCGTGACGGCGGCCATCGACGCGATGCGGGC CGGACACGTGGACGCGCTGTGCACCGCGCCCGTGTCGAAGGAGCAGATTTCCCGCGCGGGCATCCCCTTCATGGGTCACA CCGAAGTGCTGGCGGAGGCCTTCGGCGTGGACGTGATGATGTTGATGGATGGGCCTCGCGTGCGCGTGGCGCTCGCCACC AACCACGTTCCCCTGGCGGACCTGCCGCGCCTGCTCACCGTGGACGGACTGACCGCGCAACTCAAGCTGCTGTCGCGCAG CCTGGAGCCGGTGGTGGGCCACAAGCCGCGCATCGCCGTGCTGGGGCTCAACCCGCACGCGGGCGAAGGTGGGCTCCTGG GACGCGAAGAGGTGGAGGTGATTGGCCCCGCCATCCGCAAGGCCCGCGCGGCCCGGGTGGACGCGAATGGGCCCATCCCC GCGGACGGGCTCTTCGCGAAGCCCGACGAGGTGGGCGCGCGCTACGACGCGGTGCTGGCCATGTACCACGACCAGGGGCT CATCCCGGCCAAGGCGCTGGACTTCGAGCGCACGGTGAACGTGACGCTGGGCCTGCCCGTGCCGCGCACGTCTCCCGACC ACGGCACGGCCTACGCCATCGCCGGCAAGGGTGAGGCGAGCTGCGTGCCCATGGTGGAAGCACTGCTCAAGGCCGCCCAG CTCGCGGGGGCCCGTCTTGCACACCAGGCAACCGGGCGACGTGCTCGGCCAGGTCCGCTCCGTCCTTCGCCGGGTCGATG A
Upstream 100 bases:
>100_bases TGGAGGGCAAGCTGCTCCAGGAGAAGACGGAGAAGTTCCTCGACCAGTACGTGCAGGAACTGCGGCAGAAGGCCAACGTC GACGTGAAGCTGTAGCCGCC
Downstream 100 bases:
>100_bases GCTGAACGTGTGCCCCGGAGCCACTGTCCGGGACCACCAGCACGCTCACGAGGCCCCGGGGACACTCCCCCAGACAGCCT GACGCCATCACCCGCGTCCG
Product: 4-hydroxythreonine-4-phosphate dehydrogenase
Products: NA
Alternate protein names: 4-(phosphohydroxy)-L-threonine dehydrogenase [H]
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MGLPHVGISLGDVSGIGPEVTAAALTKPSVRKVLVPVIFGDGPTLARFPAFRRYARVEPSALGRVEGPTVVEVTRLAEKD RVPGEPSREGGRAQYAFVTAAIDAMRAGHVDALCTAPVSKEQISRAGIPFMGHTEVLAEAFGVDVMMLMDGPRVRVALAT NHVPLADLPRLLTVDGLTAQLKLLSRSLEPVVGHKPRIAVLGLNPHAGEGGLLGREEVEVIGPAIRKARAARVDANGPIP ADGLFAKPDEVGARYDAVLAMYHDQGLIPAKALDFERTVNVTLGLPVPRTSPDHGTAYAIAGKGEASCVPMVEALLKAAQ LAGARLAHQATGRRARPGPLRPSPGR
Sequences:
>Translated_346_residues MGLPHVGISLGDVSGIGPEVTAAALTKPSVRKVLVPVIFGDGPTLARFPAFRRYARVEPSALGRVEGPTVVEVTRLAEKD RVPGEPSREGGRAQYAFVTAAIDAMRAGHVDALCTAPVSKEQISRAGIPFMGHTEVLAEAFGVDVMMLMDGPRVRVALAT NHVPLADLPRLLTVDGLTAQLKLLSRSLEPVVGHKPRIAVLGLNPHAGEGGLLGREEVEVIGPAIRKARAARVDANGPIP ADGLFAKPDEVGARYDAVLAMYHDQGLIPAKALDFERTVNVTLGLPVPRTSPDHGTAYAIAGKGEASCVPMVEALLKAAQ LAGARLAHQATGRRARPGPLRPSPGR >Mature_345_residues GLPHVGISLGDVSGIGPEVTAAALTKPSVRKVLVPVIFGDGPTLARFPAFRRYARVEPSALGRVEGPTVVEVTRLAEKDR VPGEPSREGGRAQYAFVTAAIDAMRAGHVDALCTAPVSKEQISRAGIPFMGHTEVLAEAFGVDVMMLMDGPRVRVALATN HVPLADLPRLLTVDGLTAQLKLLSRSLEPVVGHKPRIAVLGLNPHAGEGGLLGREEVEVIGPAIRKARAARVDANGPIPA DGLFAKPDEVGARYDAVLAMYHDQGLIPAKALDFERTVNVTLGLPVPRTSPDHGTAYAIAGKGEASCVPMVEALLKAAQL AGARLAHQATGRRARPGPLRPSPGR
Specific function: Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) [H]
COG id: COG1995
COG function: function code H; Pyridoxal phosphate biosynthesis protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pdxA family [H]
Homologues:
Organism=Escherichia coli, GI1786237, Length=240, Percent_Identity=44.5833333333333, Blast_Score=170, Evalue=1e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005255 [H]
Pfam domain/function: PF04166 PdxA [H]
EC number: =1.1.1.262 [H]
Molecular weight: Translated: 36272; Mature: 36140
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLPHVGISLGDVSGIGPEVTAAALTKPSVRKVLVPVIFGDGPTLARFPAFRRYARVEPS CCCCCCCEEECCCCCCCCCHHHHHHCCCCHHEEEEEEEECCCCCHHHHHHHHHHHCCCHH ALGRVEGPTVVEVTRLAEKDRVPGEPSREGGRAQYAFVTAAIDAMRAGHVDALCTAPVSK HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEECCCCCH EQISRAGIPFMGHTEVLAEAFGVDVMMLMDGPRVRVALATNHVPLADLPRLLTVDGLTAQ HHHHHCCCCCCCHHHHHHHHHCCEEEEEECCCEEEEEEEECCCCHHHCCCEEEECCHHHH LKLLSRSLEPVVGHKPRIAVLGLNPHAGEGGLLGREEVEVIGPAIRKARAARVDANGPIP HHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC ADGLFAKPDEVGARYDAVLAMYHDQGLIPAKALDFERTVNVTLGLPVPRTSPDHGTAYAI CCCCCCCCHHHCCHHHEEEEEECCCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCEEEE AGKGEASCVPMVEALLKAAQLAGARLAHQATGRRARPGPLRPSPGR ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure GLPHVGISLGDVSGIGPEVTAAALTKPSVRKVLVPVIFGDGPTLARFPAFRRYARVEPS CCCCCCEEECCCCCCCCCHHHHHHCCCCHHEEEEEEEECCCCCHHHHHHHHHHHCCCHH ALGRVEGPTVVEVTRLAEKDRVPGEPSREGGRAQYAFVTAAIDAMRAGHVDALCTAPVSK HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEECCCCCH EQISRAGIPFMGHTEVLAEAFGVDVMMLMDGPRVRVALATNHVPLADLPRLLTVDGLTAQ HHHHHCCCCCCCHHHHHHHHHCCEEEEEECCCEEEEEEEECCCCHHHCCCEEEECCHHHH LKLLSRSLEPVVGHKPRIAVLGLNPHAGEGGLLGREEVEVIGPAIRKARAARVDANGPIP HHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC ADGLFAKPDEVGARYDAVLAMYHDQGLIPAKALDFERTVNVTLGLPVPRTSPDHGTAYAI CCCCCCCCHHHCCHHHEEEEEECCCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCEEEE AGKGEASCVPMVEALLKAAQLAGARLAHQATGRRARPGPLRPSPGR ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA