| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is sthA [H]
Identifier: 108762684
GI number: 108762684
Start: 2805118
End: 2806521
Strand: Reverse
Name: sthA [H]
Synonym: MXAN_2411
Alternate gene names: 108762684
Gene position: 2806521-2805118 (Counterclockwise)
Preceding gene: 108759074
Following gene: 108763323
Centisome position: 30.71
GC content: 71.01
Gene sequence:
>1404_bases ATGGCGGACTTCGACCTGGTGGTGATTGGCTCCGGCCCGGCGGGTGAGTGGGGCGCGGTACAAGCGGCGCTGGCGGGCAA GCGCGTAGCGGTGGTGGAGCGGGAGCCCGTGCTGGGTGGTACCGCGGCGAACACAGGCACCCTTCCCTCCAAGACGCTGC GCGAGACGGCGCTGCACCTGTCCGGCTTCCGGGCGCGCGGGCTGTACAGCGTGGAGACGACGCTGCGGCACGAGGCCACG GTGTCCGACTTCCTCTTCCGCGAACGGCGGGTGAAGGACATCGAGCGCGAGCGAATCGCCCGCAACCTCCAGCGCCACAA GGTGGAAATCATCCAGGGCACCGGCGCGCTCGTGGACGCGAACACCGTCGTCGTGCGGCGCCAGGACGCCCCGGAGCGGC GCCTCACCGGCGGCACCATCCTGGTGGCCACCGGCTCGTCGCCGTACCGGCCGCCGCTGTACCCCTTCGAGGACCCGCGC ATCCACGACTCGGACGAGGTGCTGGAGCTCGAAAGGCTGCCGCGCTCGCTGGTGGTGGTGGGCGCCGGCGTCATCGGCTG TGAGTACGCCTGCATGTTCGCCGCCATGGACATCCCGGTGACGCTGGTGGAGGCGCGCGCGGAGCTGCTGCCCTTCCTGG ACGACGAGTTCTCCGCGCTGCTGGGCCAGCGCATGGAGGCGCTCGGCATCCAACTGCGCTTCGGGCAGGTGGTGGAGCAG GTAGACGTGCCGCGGGACGCGGACACTCCCATCCGGATGATGCTCTCCTCCGGCGCCGTGCTTGAGACGGACCAGGTCCT GGTCGCCTCCGGCCGCACCGCCAACACGGCGGGCCTGGGGCTGGAGGCCCTGGGCGTGCAGGTGGGCCCGCGCGGCCAGG TGGAGGTGGGCCCCACCTACCAGACGGCCCTGCCCCACATCTATGCCGTGGGGGACGTCATCGGCTTCCCGGCGCTGGCC TCCACGTCCATGGACCAGGCGCGCATCGCCGTGGAGCACGCGTTCGACCTGGGCGGCGTGCGCACCATGGCGCCGGTGCT GCCCTACGGCATCTACACCATCCCCGAAGTGTCGATGGCCGGCGAGACAGAGGAGGCCCTGCGCACGCTGAACGTGCCCT ACGTGGCCGGCCGCGCCGCCTTCGCCACCAACCCGCGCGGTCAGATTCTGGGAGACACGCACGGCCTGCTGAAGCTGCTC TTCCACCGGGAGAGCCTCAAGCTGCTGGGCGTGCACGTCATGGGGCCCCAGGCCTCCGAGCTGGTGCACGTGGGCCTCAC CGCCCTGCTCACCGGCTCCACGGCCCGGCTCTTCGTGGAGACGTGCTTCAACTACCCGACGCTGTCGGAGGCCTACAAGG CGGCCACCTTCGACGCGTTGGATCAGCTCAGCGGCTGCCCCTGA
Upstream 100 bases:
>100_bases CGCCGGACGCAACACGGCACGGAACGGCGGCGCGGCATCCGCCCCGGCGGCACGGGGGATTGCCTTCAAACGACCGGCGG GGTCGCGTACCTTCGCGCCC
Downstream 100 bases:
>100_bases GGCTGCCCACCGTGAGGCCCGTGGCGAAAGGGGCCGCTTCGTGCAGCTCGTCCGCCGAGCCCCGCGCCAGCCGGGGTGCC TCGGCGGGCGCTTCCCGGGC
Product: soluble pyridine nucleotide transhydrogenase
Products: NA
Alternate protein names: STH; NAD(P)(+) transhydrogenase [B-specific] [H]
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MADFDLVVIGSGPAGEWGAVQAALAGKRVAVVEREPVLGGTAANTGTLPSKTLRETALHLSGFRARGLYSVETTLRHEAT VSDFLFRERRVKDIERERIARNLQRHKVEIIQGTGALVDANTVVVRRQDAPERRLTGGTILVATGSSPYRPPLYPFEDPR IHDSDEVLELERLPRSLVVVGAGVIGCEYACMFAAMDIPVTLVEARAELLPFLDDEFSALLGQRMEALGIQLRFGQVVEQ VDVPRDADTPIRMMLSSGAVLETDQVLVASGRTANTAGLGLEALGVQVGPRGQVEVGPTYQTALPHIYAVGDVIGFPALA STSMDQARIAVEHAFDLGGVRTMAPVLPYGIYTIPEVSMAGETEEALRTLNVPYVAGRAAFATNPRGQILGDTHGLLKLL FHRESLKLLGVHVMGPQASELVHVGLTALLTGSTARLFVETCFNYPTLSEAYKAATFDALDQLSGCP
Sequences:
>Translated_467_residues MADFDLVVIGSGPAGEWGAVQAALAGKRVAVVEREPVLGGTAANTGTLPSKTLRETALHLSGFRARGLYSVETTLRHEAT VSDFLFRERRVKDIERERIARNLQRHKVEIIQGTGALVDANTVVVRRQDAPERRLTGGTILVATGSSPYRPPLYPFEDPR IHDSDEVLELERLPRSLVVVGAGVIGCEYACMFAAMDIPVTLVEARAELLPFLDDEFSALLGQRMEALGIQLRFGQVVEQ VDVPRDADTPIRMMLSSGAVLETDQVLVASGRTANTAGLGLEALGVQVGPRGQVEVGPTYQTALPHIYAVGDVIGFPALA STSMDQARIAVEHAFDLGGVRTMAPVLPYGIYTIPEVSMAGETEEALRTLNVPYVAGRAAFATNPRGQILGDTHGLLKLL FHRESLKLLGVHVMGPQASELVHVGLTALLTGSTARLFVETCFNYPTLSEAYKAATFDALDQLSGCP >Mature_466_residues ADFDLVVIGSGPAGEWGAVQAALAGKRVAVVEREPVLGGTAANTGTLPSKTLRETALHLSGFRARGLYSVETTLRHEATV SDFLFRERRVKDIERERIARNLQRHKVEIIQGTGALVDANTVVVRRQDAPERRLTGGTILVATGSSPYRPPLYPFEDPRI HDSDEVLELERLPRSLVVVGAGVIGCEYACMFAAMDIPVTLVEARAELLPFLDDEFSALLGQRMEALGIQLRFGQVVEQV DVPRDADTPIRMMLSSGAVLETDQVLVASGRTANTAGLGLEALGVQVGPRGQVEVGPTYQTALPHIYAVGDVIGFPALAS TSMDQARIAVEHAFDLGGVRTMAPVLPYGIYTIPEVSMAGETEEALRTLNVPYVAGRAAFATNPRGQILGDTHGLLKLLF HRESLKLLGVHVMGPQASELVHVGLTALLTGSTARLFVETCFNYPTLSEAYKAATFDALDQLSGCP
Specific function: Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI91199540, Length=466, Percent_Identity=32.4034334763949, Blast_Score=232, Evalue=4e-61, Organism=Homo sapiens, GI50301238, Length=463, Percent_Identity=27.4298056155508, Blast_Score=126, Evalue=5e-29, Organism=Homo sapiens, GI33519430, Length=483, Percent_Identity=26.0869565217391, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI33519428, Length=483, Percent_Identity=26.0869565217391, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI33519426, Length=483, Percent_Identity=26.0869565217391, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI148277065, Length=483, Percent_Identity=26.0869565217391, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI291045266, Length=492, Percent_Identity=25.2032520325203, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI148277071, Length=483, Percent_Identity=26.0869565217391, Blast_Score=105, Evalue=8e-23, Organism=Homo sapiens, GI22035672, Length=466, Percent_Identity=27.2532188841202, Blast_Score=99, Evalue=8e-21, Organism=Homo sapiens, GI291045268, Length=480, Percent_Identity=24.7916666666667, Blast_Score=99, Evalue=8e-21, Organism=Escherichia coli, GI87082354, Length=464, Percent_Identity=40.7327586206897, Blast_Score=355, Evalue=3e-99, Organism=Escherichia coli, GI1786307, Length=460, Percent_Identity=30.2173913043478, Blast_Score=177, Evalue=1e-45, Organism=Escherichia coli, GI87081717, Length=458, Percent_Identity=28.3842794759825, Blast_Score=149, Evalue=4e-37, Organism=Escherichia coli, GI1789915, Length=447, Percent_Identity=25.7270693512304, Blast_Score=103, Evalue=3e-23, Organism=Caenorhabditis elegans, GI32565766, Length=477, Percent_Identity=30.8176100628931, Blast_Score=209, Evalue=2e-54, Organism=Caenorhabditis elegans, GI17557007, Length=477, Percent_Identity=23.6897274633124, Blast_Score=98, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71982272, Length=506, Percent_Identity=24.3083003952569, Blast_Score=98, Evalue=9e-21, Organism=Caenorhabditis elegans, GI71983419, Length=285, Percent_Identity=27.719298245614, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71983429, Length=285, Percent_Identity=27.719298245614, Blast_Score=86, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6321091, Length=483, Percent_Identity=29.8136645962733, Blast_Score=190, Evalue=4e-49, Organism=Saccharomyces cerevisiae, GI6325240, Length=475, Percent_Identity=28.8421052631579, Blast_Score=162, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6325166, Length=465, Percent_Identity=25.1612903225806, Blast_Score=110, Evalue=6e-25, Organism=Drosophila melanogaster, GI21358499, Length=463, Percent_Identity=33.2613390928726, Blast_Score=230, Evalue=1e-60, Organism=Drosophila melanogaster, GI17737741, Length=486, Percent_Identity=27.7777777777778, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI24640549, Length=469, Percent_Identity=27.2921108742004, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI24640553, Length=469, Percent_Identity=27.2921108742004, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI24640551, Length=469, Percent_Identity=27.2921108742004, Blast_Score=112, Evalue=5e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 - InterPro: IPR022962 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.6.1.1 [H]
Molecular weight: Translated: 50159; Mature: 50028
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADFDLVVIGSGPAGEWGAVQAALAGKRVAVVEREPVLGGTAANTGTLPSKTLRETALHL CCCCEEEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH SGFRARGLYSVETTLRHEATVSDFLFRERRVKDIERERIARNLQRHKVEIIQGTGALVDA CCHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEC NTVVVRRQDAPERRLTGGTILVATGSSPYRPPLYPFEDPRIHDSDEVLELERLPRSLVVV CEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE GAGVIGCEYACMFAAMDIPVTLVEARAELLPFLDDEFSALLGQRMEALGIQLRFGQVVEQ ECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEHHHHHHHH VDVPRDADTPIRMMLSSGAVLETDQVLVASGRTANTAGLGLEALGVQVGPRGQVEVGPTY HCCCCCCCCHHHHHHCCCCEEECCCEEEECCCCCCCCCCCHHHCCEEECCCCCEEECCCH QTALPHIYAVGDVIGFPALASTSMDQARIAVEHAFDLGGVRTMAPVLPYGIYTIPEVSMA HHHCCHHEEHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEECCCCCCC GETEEALRTLNVPYVAGRAAFATNPRGQILGDTHGLLKLLFHRESLKLLGVHVMGPQASE CCHHHHHHHCCCCEEECCEEECCCCCCCEECCHHHHHHHHHHHCCEEEEEEEEECCCHHH LVHVGLTALLTGSTARLFVETCFNYPTLSEAYKAATFDALDQLSGCP HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ADFDLVVIGSGPAGEWGAVQAALAGKRVAVVEREPVLGGTAANTGTLPSKTLRETALHL CCCEEEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH SGFRARGLYSVETTLRHEATVSDFLFRERRVKDIERERIARNLQRHKVEIIQGTGALVDA CCHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEC NTVVVRRQDAPERRLTGGTILVATGSSPYRPPLYPFEDPRIHDSDEVLELERLPRSLVVV CEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE GAGVIGCEYACMFAAMDIPVTLVEARAELLPFLDDEFSALLGQRMEALGIQLRFGQVVEQ ECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEHHHHHHHH VDVPRDADTPIRMMLSSGAVLETDQVLVASGRTANTAGLGLEALGVQVGPRGQVEVGPTY HCCCCCCCCHHHHHHCCCCEEECCCEEEECCCCCCCCCCCHHHCCEEECCCCCEEECCCH QTALPHIYAVGDVIGFPALASTSMDQARIAVEHAFDLGGVRTMAPVLPYGIYTIPEVSMA HHHCCHHEEHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEECCCCCCC GETEEALRTLNVPYVAGRAAFATNPRGQILGDTHGLLKLLFHRESLKLLGVHVMGPQASE CCHHHHHHHCCCCEEECCEEECCCCCCCEECCHHHHHHHHHHHCCEEEEEEEEECCCHHH LVHVGLTALLTGSTARLFVETCFNYPTLSEAYKAATFDALDQLSGCP HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]