| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is nfrB [C]
Identifier: 108762287
GI number: 108762287
Start: 5850485
End: 5851240
Strand: Reverse
Name: nfrB [C]
Synonym: MXAN_4667
Alternate gene names: 108762287
Gene position: 5851240-5850485 (Counterclockwise)
Preceding gene: 108759028
Following gene: 108760731
Centisome position: 64.02
GC content: 66.93
Gene sequence:
>756_bases ATGGCACAGATCAAGCTTGGTGAATTGCTGATCAAGGCGAACGTGCTTCAGGAGAGCCAGCTGAAGGCCGCGCTCGCCGA ACAGGCGAAGTGGGGCGGCAAGCTGGGCGAAATCCTGGTCAGGATGAGCCTCGTCTCCGAGGACATCCTGGTGCGCGCCC TGTCCAAGCAACTGGGAATGCCGGCGGTGAACCTGGATGCGGTGCAGATGGTGCAGCCGCACGTGAAGGCGAAGATTCCG GCCCAGACGGCGCGGGACTTCTCCGTGCTGCCGCTGCAGGTGCGGGATGACGGCAAGTCGCTGGTGGTGGCGATGTCGGA TCCGCTCAACGTGCGCATGCTGGACGAACTGCGCGCCATCACCAAGTGCCGCATCATCCCCAACGTGGCGGGCCGGACCT CCATTGCCCGGGCCTTCGCGCGCATCTACGAGCAGAACCACGAGTTGGAGGACGCGGACACCAACTTCAAGGTGGTGGAC GCCCAGGGCCGCACGGTGGTGAAGAACCTCAAGGACCTGGACCCGGCGGCCGCGGCGACCTCGCCGCGCGGCGCTCCGGC CTCGGCCCGTCCCGCCCCTGCGTCCGAGGCTCCCGCCGCCCGTCCCGCGGCGGCCTCTGGCAGCCCGGCGGAGCTGCTTC GCAACGTGGAAGAAGTGCAGCGCAAGGAAGTCGCCGCCCTCAAGGCGATGGTGGAGTTGCTCATCGAGAAGGGCGTGTTC AGCCGCGAGGAGTATCTCGCGAAGGTCAAGCGGTAG
Upstream 100 bases:
>100_bases GCCTCCGGGTCGTCCGCGCCCCTGGCACCGGGTTCCTGACCAAGCAGGCGCGGAAGAAGGGGCGCACGCTGCCGAGACAG TCTAGAGTGCGCGCCACGAC
Downstream 100 bases:
>100_bases TCCCCCATGCGCAAGAAGATTGGTGAGCTGCTCGTCGAGGCCGGCGTCGTGACGGAGGAGCAGGTCCGCGTGGCATTGGG ACGTCGGGGCGCATTCGGCA
Product: general secretion pathway protein E
Products: NA
Alternate protein names: General Secretion Pathway Protein E; General Secretory System II Protein E Domain Protein; Type IV-A Pilus Assembly ATPase PilB; MSHA Biogenesis Protein MshE; Type IV Pilus Assembly Protein PilB; General Secretory Pathway Protein E; Type IV Pilus Biogenesis Protein PilB; General Secretory System II Protein E; General Secretory System II Protein E-Like; GspIIEN Domain-Containing Protein; Pili Biogenesis Protein PilB-Like ATPase; Type IV Fimbrial Assembly Protein PilB; Mannose-Sensitive Agglutinin; Type Iv-A Pilus Assembly ATPase Pilb; PilB/PulE/GspE Family ATPase; Type IV Pilin; Type IV Pilus Assembly Protein PilF; GspIIEN Domain-Containing Response Regulator; Serine/Threonine-Protein Kinase; General Secretory Pathway Component Cryptic; Tfp Pilus Assembly Protein PilB; MshA Biogenesis Protein MshE; ATPase; Secretion System Protein E; Type II Secretory Pathway ATPase; Response Regulator Receiver Protein; Type IV Pilus Biogenesis ATPase PilB; GspE N-Terminal Domain-Containing Protein
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MAQIKLGELLIKANVLQESQLKAALAEQAKWGGKLGEILVRMSLVSEDILVRALSKQLGMPAVNLDAVQMVQPHVKAKIP AQTARDFSVLPLQVRDDGKSLVVAMSDPLNVRMLDELRAITKCRIIPNVAGRTSIARAFARIYEQNHELEDADTNFKVVD AQGRTVVKNLKDLDPAAAATSPRGAPASARPAPASEAPAARPAAASGSPAELLRNVEEVQRKEVAALKAMVELLIEKGVF SREEYLAKVKR
Sequences:
>Translated_251_residues MAQIKLGELLIKANVLQESQLKAALAEQAKWGGKLGEILVRMSLVSEDILVRALSKQLGMPAVNLDAVQMVQPHVKAKIP AQTARDFSVLPLQVRDDGKSLVVAMSDPLNVRMLDELRAITKCRIIPNVAGRTSIARAFARIYEQNHELEDADTNFKVVD AQGRTVVKNLKDLDPAAAATSPRGAPASARPAPASEAPAARPAAASGSPAELLRNVEEVQRKEVAALKAMVELLIEKGVF SREEYLAKVKR >Mature_250_residues AQIKLGELLIKANVLQESQLKAALAEQAKWGGKLGEILVRMSLVSEDILVRALSKQLGMPAVNLDAVQMVQPHVKAKIPA QTARDFSVLPLQVRDDGKSLVVAMSDPLNVRMLDELRAITKCRIIPNVAGRTSIARAFARIYEQNHELEDADTNFKVVDA QGRTVVKNLKDLDPAAAATSPRGAPASARPAPASEAPAARPAAASGSPAELLRNVEEVQRKEVAALKAMVELLIEKGVFS REEYLAKVKR
Specific function: Required For Bacteriophage N4 Adsorption. May Be A Component Of The Phage Receptor. [C]
COG id: COG2804
COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27138; Mature: 27007
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQIKLGELLIKANVLQESQLKAALAEQAKWGGKLGEILVRMSLVSEDILVRALSKQLGM CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PAVNLDAVQMVQPHVKAKIPAQTARDFSVLPLQVRDDGKSLVVAMSDPLNVRMLDELRAI CCCCHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHH TKCRIIPNVAGRTSIARAFARIYEQNHELEDADTNFKVVDAQGRTVVKNLKDLDPAAAAT HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHCC SPRGAPASARPAPASEAPAARPAAASGSPAELLRNVEEVQRKEVAALKAMVELLIEKGVF CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SREEYLAKVKR CHHHHHHHHCC >Mature Secondary Structure AQIKLGELLIKANVLQESQLKAALAEQAKWGGKLGEILVRMSLVSEDILVRALSKQLGM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PAVNLDAVQMVQPHVKAKIPAQTARDFSVLPLQVRDDGKSLVVAMSDPLNVRMLDELRAI CCCCHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHH TKCRIIPNVAGRTSIARAFARIYEQNHELEDADTNFKVVDAQGRTVVKNLKDLDPAAAAT HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHCC SPRGAPASARPAPASEAPAARPAAASGSPAELLRNVEEVQRKEVAALKAMVELLIEKGVF CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SREEYLAKVKR CHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA