| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is yedY [H]
Identifier: 108761935
GI number: 108761935
Start: 6517067
End: 6518857
Strand: Reverse
Name: yedY [H]
Synonym: MXAN_5219
Alternate gene names: 108761935
Gene position: 6518857-6517067 (Counterclockwise)
Preceding gene: 108763302
Following gene: 108759504
Centisome position: 71.32
GC content: 64.66
Gene sequence:
>1791_bases ATGGCAGACCCACCGAAACCGACCGCCACGCCACCGCCGCCCTCTGGAGCCGACCGCGTCTCACCGGAGCTGGTGAAGGA GCTGCGAGAGCGCCTCACCAAGGGCGAGGACGTCGTCGATCCGAAGACCTGGGCCGGCTCCATTCCGGCCGCCTTCGGTA TCGCCCCTCGCCTGCGAATCGGCGCGAACCGTTGGTTCAACCTGGTCTGGCTGCTCCCGATCGGTTGGGGGCTTCTCCTG TTCGGGGTCGCCGTAGCGCAGTATCTGCGCGGGCTCCCCGCGGTCGAAGGGTTCATCCACCGGCATCCCGGGACCGGGTT CGCAACCGCGTTTGCCACGCCGATGCCGGTCTGGTTGCGCGCCCAGCATTTTCTGAACTTGTTCTTCCTCATCTTCATCA TTCGCGCGGGCCTCCAGATCCTCGCCGACCATCCCCGGCTGTACTGGACCCGGCACTCGACGCCGGGAAAAGAGTGGCTC CGGATGCAGAAGCAGGTGCCGGACCTGCCGCTCTGGACCGCCAAGCAGGACTCCCTCACGCTGCCCAAACATCTTGGGCT TCCGGGCATCCGCCACTCAATCGGGCTGGCCCGCTGGTGGCACCTCGGGATCGATATGTTGTGGCTGGCGAACGGACTCG TCTTCTACGTGCTGCTCTTCGCGACCGGAGAGTGGCGCCGCATCGTCCCGACGAACTGGCAGGTGTTCCCCGACGCCGCG TCTGCTCTGCTCCAGTACCTCTCCCTGCGCTGGCCTCAGAACGATGGCTGGGTCGCGTACAACGGCCTCCAGATCATCGC CTACTTCATCACGGTCTTCATCGCGGCGCCGCTCGCGCTCATGACCGGGCTCGGCATGTCGCCAGCGCTTTCGACCCGGT TCCACGGCATCAGCAAGCGGCTCAGCATCCAGACCGCGCGCTCCCTGCACTTTCTCGTCCTGTGCTGGTTCATCCTCTTC ACCTTCATCCATGTCACCATGGTCTTCGCGACCGGCCTGCTGCGAAACTTGAACCACGTGTACGCGGGGACCGACGCCAA CGATTGGGTCGGGTTTGGCATCTTCGCTGTCTCCATGGCGGTCGTCGTGATCGCGTGGGTGGCGGCCACGCCGTTCACGC TGCGACATCCGCGGGTCGTGCAACGCGTCGGGTATTCGCTGATCGGCCCGGCCCAGCGGCTCTTCGAGCACCTCGACGCC AAGCCAGGGACCTACACGGACAAGGACATCTCGCCGTACTTCTGGCACAACGGCAAGTACCCCGAGACGCCGGAGTACCG CGCGCTCTTCGACAACCACTTCGCCGATTACCGGCTACGAATTCACGGGCTCGTCGAGAATCCGGTCGAGCTGAGCCTCG ACGAGCTGCGCGCCATGCCGCGCCACGAGCAGATCACGCAGCACTTCTGCATCCAGGGCTGGTCCGGTGTCGCCAAGTGG GGCGGCGTCTCGATGCAGACCCTCCTCGAGCTGGTCAGGCCGAAGCCCGACGCGAAATGGGTCGTGTTCTACTCGCTCGG CGACGGTTCCGACGGCGGCCGCTACTACGACGCGCATCCCATCGCGCAGATGCACTATCAGCTCACGATGCTCGCCTATG ACATGAACGGCGAGCCGCTTTCTTACGGCCACGGGGCGCCGCTTCGCCTGCGCAACGAGGTCCAGCTCGGCTTCAAGCAA GTGAAGTGGATTGCCGGCATCGAGTTCGTCGCTGACTTCTTCGAAGTGGGAGGCGGCTACGGCGGCTACGATGAAGATCA CGAGTTCTTCGGGTATCGTCAGTCGATCTGA
Upstream 100 bases:
>100_bases GCAGCGATGCCTGCCGATGTGCAACTCATGCAGAGGAGGCGGTTCGCTCTCGCTCTAGGGGAGCCGCGCGAAGCCGAGTC GCCGCTCAGGAGCCCGTGAA
Downstream 100 bases:
>100_bases GTCGGGTGCGAAGGAATGGGCGCGCTCCTCGATGGTTTGCTCCCCCCATTTTCGGACCCGTTGAAGCGTGAGAGCGTCCT CGCGGCGAGGAGGCCGGTCG
Product: molybdopterin-binding oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 596; Mature: 595
Protein sequence:
>596_residues MADPPKPTATPPPPSGADRVSPELVKELRERLTKGEDVVDPKTWAGSIPAAFGIAPRLRIGANRWFNLVWLLPIGWGLLL FGVAVAQYLRGLPAVEGFIHRHPGTGFATAFATPMPVWLRAQHFLNLFFLIFIIRAGLQILADHPRLYWTRHSTPGKEWL RMQKQVPDLPLWTAKQDSLTLPKHLGLPGIRHSIGLARWWHLGIDMLWLANGLVFYVLLFATGEWRRIVPTNWQVFPDAA SALLQYLSLRWPQNDGWVAYNGLQIIAYFITVFIAAPLALMTGLGMSPALSTRFHGISKRLSIQTARSLHFLVLCWFILF TFIHVTMVFATGLLRNLNHVYAGTDANDWVGFGIFAVSMAVVVIAWVAATPFTLRHPRVVQRVGYSLIGPAQRLFEHLDA KPGTYTDKDISPYFWHNGKYPETPEYRALFDNHFADYRLRIHGLVENPVELSLDELRAMPRHEQITQHFCIQGWSGVAKW GGVSMQTLLELVRPKPDAKWVVFYSLGDGSDGGRYYDAHPIAQMHYQLTMLAYDMNGEPLSYGHGAPLRLRNEVQLGFKQ VKWIAGIEFVADFFEVGGGYGGYDEDHEFFGYRQSI
Sequences:
>Translated_596_residues MADPPKPTATPPPPSGADRVSPELVKELRERLTKGEDVVDPKTWAGSIPAAFGIAPRLRIGANRWFNLVWLLPIGWGLLL FGVAVAQYLRGLPAVEGFIHRHPGTGFATAFATPMPVWLRAQHFLNLFFLIFIIRAGLQILADHPRLYWTRHSTPGKEWL RMQKQVPDLPLWTAKQDSLTLPKHLGLPGIRHSIGLARWWHLGIDMLWLANGLVFYVLLFATGEWRRIVPTNWQVFPDAA SALLQYLSLRWPQNDGWVAYNGLQIIAYFITVFIAAPLALMTGLGMSPALSTRFHGISKRLSIQTARSLHFLVLCWFILF TFIHVTMVFATGLLRNLNHVYAGTDANDWVGFGIFAVSMAVVVIAWVAATPFTLRHPRVVQRVGYSLIGPAQRLFEHLDA KPGTYTDKDISPYFWHNGKYPETPEYRALFDNHFADYRLRIHGLVENPVELSLDELRAMPRHEQITQHFCIQGWSGVAKW GGVSMQTLLELVRPKPDAKWVVFYSLGDGSDGGRYYDAHPIAQMHYQLTMLAYDMNGEPLSYGHGAPLRLRNEVQLGFKQ VKWIAGIEFVADFFEVGGGYGGYDEDHEFFGYRQSI >Mature_595_residues ADPPKPTATPPPPSGADRVSPELVKELRERLTKGEDVVDPKTWAGSIPAAFGIAPRLRIGANRWFNLVWLLPIGWGLLLF GVAVAQYLRGLPAVEGFIHRHPGTGFATAFATPMPVWLRAQHFLNLFFLIFIIRAGLQILADHPRLYWTRHSTPGKEWLR MQKQVPDLPLWTAKQDSLTLPKHLGLPGIRHSIGLARWWHLGIDMLWLANGLVFYVLLFATGEWRRIVPTNWQVFPDAAS ALLQYLSLRWPQNDGWVAYNGLQIIAYFITVFIAAPLALMTGLGMSPALSTRFHGISKRLSIQTARSLHFLVLCWFILFT FIHVTMVFATGLLRNLNHVYAGTDANDWVGFGIFAVSMAVVVIAWVAATPFTLRHPRVVQRVGYSLIGPAQRLFEHLDAK PGTYTDKDISPYFWHNGKYPETPEYRALFDNHFADYRLRIHGLVENPVELSLDELRAMPRHEQITQHFCIQGWSGVAKWG GVSMQTLLELVRPKPDAKWVVFYSLGDGSDGGRYYDAHPIAQMHYQLTMLAYDMNGEPLSYGHGAPLRLRNEVQLGFKQV KWIAGIEFVADFFEVGGGYGGYDEDHEFFGYRQSI
Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yedY family [H]
Homologues:
Organism=Escherichia coli, GI1788282, Length=148, Percent_Identity=30.4054054054054, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000572 - InterPro: IPR022867 [H]
Pfam domain/function: PF00174 Oxidored_molyb [H]
EC number: NA
Molecular weight: Translated: 67436; Mature: 67305
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADPPKPTATPPPPSGADRVSPELVKELRERLTKGEDVVDPKTWAGSIPAAFGIAPRLRI CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCEEE GANRWFNLVWLLPIGWGLLLFGVAVAQYLRGLPAVEGFIHRHPGTGFATAFATPMPVWLR CCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCCCCHHHHH AQHFLNLFFLIFIIRAGLQILADHPRLYWTRHSTPGKEWLRMQKQVPDLPLWTAKQDSLT HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCC LPKHLGLPGIRHSIGLARWWHLGIDMLWLANGLVFYVLLFATGEWRRIVPTNWQVFPDAA CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECHHHH SALLQYLSLRWPQNDGWVAYNGLQIIAYFITVFIAAPLALMTGLGMSPALSTRFHGISKR HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LSIQTARSLHFLVLCWFILFTFIHVTMVFATGLLRNLNHVYAGTDANDWVGFGIFAVSMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHH VVVIAWVAATPFTLRHPRVVQRVGYSLIGPAQRLFEHLDAKPGTYTDKDISPYFWHNGKY HHHHHHHHCCCCCCCCHHHHHHCCCHHCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC PETPEYRALFDNHFADYRLRIHGLVENPVELSLDELRAMPRHEQITQHFCIQGWSGVAKW CCCCCHHHHHHCCCCCEEEEEEEECCCCHHCCHHHHHCCCCHHHHHHHHHHCCCCCHHHC GGVSMQTLLELVRPKPDAKWVVFYSLGDGSDGGRYYDAHPIAQMHYQLTMLAYDMNGEPL CCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEECCCCHHHHHEEEEEEEEECCCCCC SYGHGAPLRLRNEVQLGFKQVKWIAGIEFVADFFEVGGGYGGYDEDHEFFGYRQSI CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHCCC >Mature Secondary Structure ADPPKPTATPPPPSGADRVSPELVKELRERLTKGEDVVDPKTWAGSIPAAFGIAPRLRI CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCEEE GANRWFNLVWLLPIGWGLLLFGVAVAQYLRGLPAVEGFIHRHPGTGFATAFATPMPVWLR CCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCCCCHHHHH AQHFLNLFFLIFIIRAGLQILADHPRLYWTRHSTPGKEWLRMQKQVPDLPLWTAKQDSLT HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCC LPKHLGLPGIRHSIGLARWWHLGIDMLWLANGLVFYVLLFATGEWRRIVPTNWQVFPDAA CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECHHHH SALLQYLSLRWPQNDGWVAYNGLQIIAYFITVFIAAPLALMTGLGMSPALSTRFHGISKR HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LSIQTARSLHFLVLCWFILFTFIHVTMVFATGLLRNLNHVYAGTDANDWVGFGIFAVSMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHH VVVIAWVAATPFTLRHPRVVQRVGYSLIGPAQRLFEHLDAKPGTYTDKDISPYFWHNGKY HHHHHHHHCCCCCCCCHHHHHHCCCHHCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC PETPEYRALFDNHFADYRLRIHGLVENPVELSLDELRAMPRHEQITQHFCIQGWSGVAKW CCCCCHHHHHHCCCCCEEEEEEEECCCCHHCCHHHHHCCCCHHHHHHHHHHCCCCCHHHC GGVSMQTLLELVRPKPDAKWVVFYSLGDGSDGGRYYDAHPIAQMHYQLTMLAYDMNGEPL CCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEECCCCHHHHHEEEEEEEEECCCCCC SYGHGAPLRLRNEVQLGFKQVKWIAGIEFVADFFEVGGGYGGYDEDHEFFGYRQSI CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 14500908 [H]