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The map label for this gene is rarA [H]

Identifier: 108761837

GI number: 108761837

Start: 3315505

End: 3316839

Strand: Direct

Name: rarA [H]

Synonym: MXAN_2846

Alternate gene names: 108761837

Gene position: 3315505-3316839 (Clockwise)

Preceding gene: 108761059

Following gene: 108761032

Centisome position: 36.28

GC content: 69.44

Gene sequence:

>1335_bases
ATGAGCGCTGGACCCGACCTCTTCTCCGCCTCTGTCGACGTGAATCGCTTCGCGCCCCTGGCGGAGCGGATGCGGCCTCG
CACGCCTGACGAGTTCATCGGCCAGTCCCACCTGCTGGGCCCGGGCCGTCCGCTGCGCCAGCTCATCGAGCGCAAGGCCA
TCGTGTCCTCCCTCTTCTGGGGGCCCCCGGGCGTGGGCAAGACGACGCTCGCGCGGATGATGGCCACCGGTGTGGACGCG
GAGTTCGTCATCCTCTCCGCCGTGTCGGACGGCATCCCCCGCATCCGCGAGGTGGTGGCCGAGGCCGAGCGCCTGCGCAA
CCAGTACAGCCGCCGCACCGTCCTCTTCGTCGACGAAATCCACCGCTGGGCGAAGAACGTGCAGGAGCAGGCGCTGCCCC
ACGTGGAGAGCGGCCTCTTCGTCCTCCTGGGCGCCACCACGGAGAACGTCAGCTTCGAGGTTCGCCCCGCGCTCGTCAGC
CGGTGCCGCGTGTTCCAGCTCAAGGAACTCACCGTCGCGGACATCCAGTCGGCGCTGACGCGGGCGCTCGGTGATTCGAA
GCGGGGCTTGGGCGCGCGCAACCTATCGGTGGGGGAGGGGGCGCTGACGCTGCTGGCGAAGGGCGGCGTGGGCGACGTGC
GCAAGGCGCTGGGCGCGCTGGAGCTGGCGGCCAGCCTCACCGCGGACGGCGCGGAGATTACGCCCGAGACGGCGCGCGAG
GCAGTGGGCACCAGTCTGTCCCGTCACGACAAGGACGGCGACCAGCACTACGACTTGCTGAGCGCGCTGCAGAAGTCGTG
CAGGGGCTCCAACGTCCAGGGCGCCGTCTTCTGGGCGGCGAAGCTGCTCCAGACGGGCGACGTGGCGTCACTGTGGCGAC
GGCTCAAGGTGATTGCCGTGGAGGACGTGGGAATGGCGATGCCGGAGGCCATCAGCGTCGTGCGTGACTGCGAGGAGGCT
TTCCACGCCATGGGCATGCCGGAGGGGCGCATCTGCGTGGCGCACGCCGTCGTCCTGCTGGCCACGGCGAAGAAGAGCAA
CCGTGCCTATGCGGCGCTGGACGCGGCGCTGGCGGCGCTCCAGGAGCATCCCAACGCGGAGCCTCCGCTTCACATCCGCA
ACGCGCCCACCGAGCTGATGAAGGAGCTGGGACACGGCAAGGGCTACCAGACGCCCTGGAACTTCAAGGACCACTACGTG
CCCGGGCAGACGTACCTGCCCGCCCCGCTGGAGCGTTCCGTCTTCTATCGCCCGAGCAAGGAAGGCTACGAGGCGGAGAT
TCACGAGCGCATGAGCCACTGGTGGCGCGAGGACAAGGCGTCCCGAGGCGAGTAG

Upstream 100 bases:

>100_bases
GCGGACCGCGTTGAACGACCTGACCTTGGGACAGGTGCTCGTCGAGCCGCTCGATTCGGACGATTGACCCTGGGCCACGG
AGGGGAGAGCCTGCGGCCCG

Downstream 100 bases:

>100_bases
GGCAGGCAGCCCCCGCGGGCTGGATTCTGCCGTCCGGTGCGCAATGCTCCTGGGCAGTAGTGCCGGTTGTTCATCCAGAG
ACGCCCTCCCAACTTGTTGC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MSAGPDLFSASVDVNRFAPLAERMRPRTPDEFIGQSHLLGPGRPLRQLIERKAIVSSLFWGPPGVGKTTLARMMATGVDA
EFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEIHRWAKNVQEQALPHVESGLFVLLGATTENVSFEVRPALVS
RCRVFQLKELTVADIQSALTRALGDSKRGLGARNLSVGEGALTLLAKGGVGDVRKALGALELAASLTADGAEITPETARE
AVGTSLSRHDKDGDQHYDLLSALQKSCRGSNVQGAVFWAAKLLQTGDVASLWRRLKVIAVEDVGMAMPEAISVVRDCEEA
FHAMGMPEGRICVAHAVVLLATAKKSNRAYAALDAALAALQEHPNAEPPLHIRNAPTELMKELGHGKGYQTPWNFKDHYV
PGQTYLPAPLERSVFYRPSKEGYEAEIHERMSHWWREDKASRGE

Sequences:

>Translated_444_residues
MSAGPDLFSASVDVNRFAPLAERMRPRTPDEFIGQSHLLGPGRPLRQLIERKAIVSSLFWGPPGVGKTTLARMMATGVDA
EFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEIHRWAKNVQEQALPHVESGLFVLLGATTENVSFEVRPALVS
RCRVFQLKELTVADIQSALTRALGDSKRGLGARNLSVGEGALTLLAKGGVGDVRKALGALELAASLTADGAEITPETARE
AVGTSLSRHDKDGDQHYDLLSALQKSCRGSNVQGAVFWAAKLLQTGDVASLWRRLKVIAVEDVGMAMPEAISVVRDCEEA
FHAMGMPEGRICVAHAVVLLATAKKSNRAYAALDAALAALQEHPNAEPPLHIRNAPTELMKELGHGKGYQTPWNFKDHYV
PGQTYLPAPLERSVFYRPSKEGYEAEIHERMSHWWREDKASRGE
>Mature_443_residues
SAGPDLFSASVDVNRFAPLAERMRPRTPDEFIGQSHLLGPGRPLRQLIERKAIVSSLFWGPPGVGKTTLARMMATGVDAE
FVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEIHRWAKNVQEQALPHVESGLFVLLGATTENVSFEVRPALVSR
CRVFQLKELTVADIQSALTRALGDSKRGLGARNLSVGEGALTLLAKGGVGDVRKALGALELAASLTADGAEITPETAREA
VGTSLSRHDKDGDQHYDLLSALQKSCRGSNVQGAVFWAAKLLQTGDVASLWRRLKVIAVEDVGMAMPEAISVVRDCEEAF
HAMGMPEGRICVAHAVVLLATAKKSNRAYAALDAALAALQEHPNAEPPLHIRNAPTELMKELGHGKGYQTPWNFKDHYVP
GQTYLPAPLERSVFYRPSKEGYEAEIHERMSHWWREDKASRGE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=37.4429223744292, Blast_Score=266, Evalue=3e-71,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=34.0182648401827, Blast_Score=221, Evalue=1e-57,
Organism=Escherichia coli, GI1787119, Length=432, Percent_Identity=41.8981481481481, Blast_Score=335, Evalue=4e-93,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=34.7517730496454, Blast_Score=238, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48575; Mature: 48444

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGPDLFSASVDVNRFAPLAERMRPRTPDEFIGQSHLLGPGRPLRQLIERKAIVSSLFW
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
GPPGVGKTTLARMMATGVDAEFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEI
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEHHHHH
HRWAKNVQEQALPHVESGLFVLLGATTENVSFEVRPALVSRCRVFQLKELTVADIQSALT
HHHHHHHHHHHCCHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
RALGDSKRGLGARNLSVGEGALTLLAKGGVGDVRKALGALELAASLTADGAEITPETARE
HHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AVGTSLSRHDKDGDQHYDLLSALQKSCRGSNVQGAVFWAAKLLQTGDVASLWRRLKVIAV
HHCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHEEE
EDVGMAMPEAISVVRDCEEAFHAMGMPEGRICVAHAVVLLATAKKSNRAYAALDAALAAL
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QEHPNAEPPLHIRNAPTELMKELGHGKGYQTPWNFKDHYVPGQTYLPAPLERSVFYRPSK
HHCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
EGYEAEIHERMSHWWREDKASRGE
CCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAGPDLFSASVDVNRFAPLAERMRPRTPDEFIGQSHLLGPGRPLRQLIERKAIVSSLFW
CCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
GPPGVGKTTLARMMATGVDAEFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEI
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEHHHHH
HRWAKNVQEQALPHVESGLFVLLGATTENVSFEVRPALVSRCRVFQLKELTVADIQSALT
HHHHHHHHHHHCCHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
RALGDSKRGLGARNLSVGEGALTLLAKGGVGDVRKALGALELAASLTADGAEITPETARE
HHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AVGTSLSRHDKDGDQHYDLLSALQKSCRGSNVQGAVFWAAKLLQTGDVASLWRRLKVIAV
HHCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHEEE
EDVGMAMPEAISVVRDCEEAFHAMGMPEGRICVAHAVVLLATAKKSNRAYAALDAALAAL
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QEHPNAEPPLHIRNAPTELMKELGHGKGYQTPWNFKDHYVPGQTYLPAPLERSVFYRPSK
HHCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
EGYEAEIHERMSHWWREDKASRGE
CCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]