| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is speE [H]
Identifier: 108761468
GI number: 108761468
Start: 6396920
End: 6399796
Strand: Reverse
Name: speE [H]
Synonym: MXAN_5122
Alternate gene names: 108761468
Gene position: 6399796-6396920 (Counterclockwise)
Preceding gene: 108757987
Following gene: 108763387
Centisome position: 70.02
GC content: 70.0
Gene sequence:
>2877_bases ATGTCATCTCCGGCGCGTTTTCCTAAGAACCTTGTGGCCTGCCTCCTCTTCCTGTCCGGGGGCACTGCGCTCGTTTACGA ACTCGTCTGGTCCAAGTACCTCGGGAATGTCCTGGGGAACAGCGGCCAGGCGCATGCCGTGGTGCTCGCCACGTTCATGG GAGGGCAAGCGCTGGGCGCATTTGTCTTCGGGCGGACAGCCGACCGGGCAAAGAACCCCCTGGCCCTTTACGGCCTGCTG GAGCTGGGCGTGGGCCTGTACGCGCTGGTCTTCCCCTATGTGCTCGATGTGCTGGGGGCGCTATGGCTGAACGTGGCCCC GTCCGTGCCGGATGGCTGGCGACTGGGGCCCCGGCTGCTGGTCTCCTCCGCGTCGCTGCTGATTCCCACGCTGCTGATGG GCGGCACGCTGCCGGCGCTGGTGCGGCACTTCGCCTCCAGCCTGTCGGGCGTGCGCTACGAGTTGGCGCGGCTCTACGCC GTCAACAGTCTGGGCGCGGCGGTGGGTGTGTTCATCGCCGGGACGAAGCTGGTGCCCGCCATCGGCCTGTCCTCCTCGGC GGGGCTGGCCGCGGGGCTCAACATCCTGGTGGCGCTGGCCTCGCTGGGGCTGGCCCGGCGCTTCCCGCCCGCGCTGGTGC CGGGACAGACGCCCCCCGCGGAAGCGGGCGACGCGGAGGTGTCCTATCCGCGCATCGCGGTGAGGGCGGCGCTCATCGGC GTGCTGCTGTCTGGCTTCACGTCCATGCTGTACCAGGTGACGTGGATCCGCCTGCTGTCCATCGTCCTGGGCGCGTCCAC CTACGCCTTCACGCTCATCCTCACCGCGTTCATCATGGGCATTGGCCTGGGCAGCTTCTGGCTGATGACGCGCAAGGGAC AGGTGGACTCGCTGCGCCTGTTCGGCCGGCTCCAGGTCGCGCTGGTGGCCAGCATCTGCGTGGCGCTGCCGCTCTACGTC CGGCTGCCGCACCTATTCCGCAAGGCGCAGTGGATGATGACGCGCTCGCTGGACACCTGGCCGCTGTTCCAGGTGCTGAC CTTCGGCTTCTGCTGCCTGGTGCTGCTGGTTCCCACCTTCTTCATGGGCGCGGCCTTCCCGGCGGCGGCGCGCGTGGCCA CGGCCAAGGTGTCCGAGGTGGGGCGCCAGTTGGGCGGCGTCTACTTGTGGAACACGGTGGGCACGATTACGGGTTCGGCG CTGGGCGTGCTGGTGCTGATGCCGTGGTGGGGCATGGAGGGCAACTTCATCGCGGGCGTGGCGGCCAACCTGCTCGGCGC GGGGCTGGCCTTCCACGCGGCTCCCGGCCGTCCCGCACAGCACGCGCGCGCCTTGTGGCCGGTGGCCGCCACGGCGGTGC TGGCGCTGGTGGTGCTGGGCGGGATGAGCGGCTGGGCGGTGCGGTTGTCGGGCATCGCCTCCATCCGCTCCCACGAGAAG CCGCCGGAGAGCTACGCGAAGCTGGTGGCGGACACGGAGGCCATCATCCGCCCCATCTTCTACCAGGACGACACCTTCGC CACGGTGATGGTGGCGGACGTTCCCGTGGACAACCTGCGTTTCATGAAGCTCAACGGGAAGGTGGACGCGTCCAACGGGA GCGACGTGGAGACGCAGGTGGTGGCCGGTCACCTGGGCGCCCTGTTGCACCCGCGTGAGCCCAAGTCGGTGCTGCTGGTG GGCGCCGGCGCTGCCATCACCGCGGGCAGCGTGCTGGTGCACCCCGTGGAGCACCTGGACATGGTGGAGATTGCTCCCGC CGTCATCGACGCGGCGCGCCTGTTCAAGGCGGACAACCGCAACGCGGTGGATGACCCGCGCACCCACGTGCACGTGGACG ACGCCAAGACGTTCATGGCGCTGTCGCCGCGCAAGTACGACCTGGTGGTGAGCGTGCCGTCCAACCCGTGGGTGTCCGGC GTGTCCGGCCTCTTCACGCGGGACTTCTTCCAGACCGTGGACCGGCACCTGGCGGACGACGGCGTGCTGGTGCAGTGGAT CCACACCTACGAGAGCAACGAGGACCTCATCAAGCTGGTGGTCCGCACCCTGCGAGACACCTTCCCGCACGCCACCACGT GGCTGGGGCCGCATGACCTGGTGATGGTGGCCAGCCGCAAGCCCCTGGCCTTCGATGCGGCGCGCCTGGCCGAGCGCATG GGGCATCCGGAGGTGCGGAAGGACTTGTCCCGCGTGGGCATCAACGACGTGTTCGCGCTGCTGTCCAAGCAGGTGCACAG CGAGGCCGGCCAGCTCGAGTTCGCCGGTGAGGGCCCCATCAACACGGACGACCACAACCTGCTGGAGTACGCGTCGCCCA TCGCCTTCTTCGTGTCGAATCTGGACGTGCGCGTGAAGGACGAGCGGCGCGCGCCCGAAGGGGCGGACCGCCTCTTCCTG CACGACTATGTCCAGCAGCACCCGCCCACCGCGGAGCAGGCCGCCGGGCTGTACCGGAACATCGAGCGCTACCACGCGCC CAATGACCCCATGGTGCGCGGCGCGGCCGCGCAGTGGCGGCGGCTGGCCCCCGACAGCCCGGAGTCCGCCCTGGCCCTGG GCAAGGCGGCGCTGGCCCAGCAGGACTTGACGCTGGCCGCCTCGCTCCTGGAGCCGGAGGTGGCACGGGGAGGACGCGCG CCCGCGCTGGTGACGGCCTACCTCCGGCTGGTGACGGCTCAGACCTGGGCTTCGCGCACCATGTGGACGCCTGTAGGTGC CCTGCACGACACCGTGGCCCTGGGGCGCGAGGTTGCGTCCCGGCACCCGGACGACGAACATCTGGCCCGGGCGCTGCGCT CGCTCTGCGAGGCGCTGCCCCGTTCGAGCTGCGAAGGCACGGCCCAAACGCCCGTTGCCGCCCCCGGGGGCCCCTGA
Upstream 100 bases:
>100_bases ACCCGCAGGCTTGGAGTCCAGGCGAGCATCGCGGCTTGCAGGAGATGGGTGTTCATTTGATGGGCCTGAAACATACCGAC TAAGGTTCCGCGCTGTCCCC
Downstream 100 bases:
>100_bases AATGGGGGCTTGGATCATCCCAATCGGGCCAATTGCCTGGAATCACTGAGAATTCCAGGCATCCTCCCGATGACCGATGG AGGTGGAAGTGGGATCTGCC
Product: spermine/spermidine synthase family protein
Products: NA
Alternate protein names: Putrescine aminopropyltransferase; PAPT; SPDSY [H]
Number of amino acids: Translated: 958; Mature: 957
Protein sequence:
>958_residues MSSPARFPKNLVACLLFLSGGTALVYELVWSKYLGNVLGNSGQAHAVVLATFMGGQALGAFVFGRTADRAKNPLALYGLL ELGVGLYALVFPYVLDVLGALWLNVAPSVPDGWRLGPRLLVSSASLLIPTLLMGGTLPALVRHFASSLSGVRYELARLYA VNSLGAAVGVFIAGTKLVPAIGLSSSAGLAAGLNILVALASLGLARRFPPALVPGQTPPAEAGDAEVSYPRIAVRAALIG VLLSGFTSMLYQVTWIRLLSIVLGASTYAFTLILTAFIMGIGLGSFWLMTRKGQVDSLRLFGRLQVALVASICVALPLYV RLPHLFRKAQWMMTRSLDTWPLFQVLTFGFCCLVLLVPTFFMGAAFPAAARVATAKVSEVGRQLGGVYLWNTVGTITGSA LGVLVLMPWWGMEGNFIAGVAANLLGAGLAFHAAPGRPAQHARALWPVAATAVLALVVLGGMSGWAVRLSGIASIRSHEK PPESYAKLVADTEAIIRPIFYQDDTFATVMVADVPVDNLRFMKLNGKVDASNGSDVETQVVAGHLGALLHPREPKSVLLV GAGAAITAGSVLVHPVEHLDMVEIAPAVIDAARLFKADNRNAVDDPRTHVHVDDAKTFMALSPRKYDLVVSVPSNPWVSG VSGLFTRDFFQTVDRHLADDGVLVQWIHTYESNEDLIKLVVRTLRDTFPHATTWLGPHDLVMVASRKPLAFDAARLAERM GHPEVRKDLSRVGINDVFALLSKQVHSEAGQLEFAGEGPINTDDHNLLEYASPIAFFVSNLDVRVKDERRAPEGADRLFL HDYVQQHPPTAEQAAGLYRNIERYHAPNDPMVRGAAAQWRRLAPDSPESALALGKAALAQQDLTLAASLLEPEVARGGRA PALVTAYLRLVTAQTWASRTMWTPVGALHDTVALGREVASRHPDDEHLARALRSLCEALPRSSCEGTAQTPVAAPGGP
Sequences:
>Translated_958_residues MSSPARFPKNLVACLLFLSGGTALVYELVWSKYLGNVLGNSGQAHAVVLATFMGGQALGAFVFGRTADRAKNPLALYGLL ELGVGLYALVFPYVLDVLGALWLNVAPSVPDGWRLGPRLLVSSASLLIPTLLMGGTLPALVRHFASSLSGVRYELARLYA VNSLGAAVGVFIAGTKLVPAIGLSSSAGLAAGLNILVALASLGLARRFPPALVPGQTPPAEAGDAEVSYPRIAVRAALIG VLLSGFTSMLYQVTWIRLLSIVLGASTYAFTLILTAFIMGIGLGSFWLMTRKGQVDSLRLFGRLQVALVASICVALPLYV RLPHLFRKAQWMMTRSLDTWPLFQVLTFGFCCLVLLVPTFFMGAAFPAAARVATAKVSEVGRQLGGVYLWNTVGTITGSA LGVLVLMPWWGMEGNFIAGVAANLLGAGLAFHAAPGRPAQHARALWPVAATAVLALVVLGGMSGWAVRLSGIASIRSHEK PPESYAKLVADTEAIIRPIFYQDDTFATVMVADVPVDNLRFMKLNGKVDASNGSDVETQVVAGHLGALLHPREPKSVLLV GAGAAITAGSVLVHPVEHLDMVEIAPAVIDAARLFKADNRNAVDDPRTHVHVDDAKTFMALSPRKYDLVVSVPSNPWVSG VSGLFTRDFFQTVDRHLADDGVLVQWIHTYESNEDLIKLVVRTLRDTFPHATTWLGPHDLVMVASRKPLAFDAARLAERM GHPEVRKDLSRVGINDVFALLSKQVHSEAGQLEFAGEGPINTDDHNLLEYASPIAFFVSNLDVRVKDERRAPEGADRLFL HDYVQQHPPTAEQAAGLYRNIERYHAPNDPMVRGAAAQWRRLAPDSPESALALGKAALAQQDLTLAASLLEPEVARGGRA PALVTAYLRLVTAQTWASRTMWTPVGALHDTVALGREVASRHPDDEHLARALRSLCEALPRSSCEGTAQTPVAAPGGP >Mature_957_residues SSPARFPKNLVACLLFLSGGTALVYELVWSKYLGNVLGNSGQAHAVVLATFMGGQALGAFVFGRTADRAKNPLALYGLLE LGVGLYALVFPYVLDVLGALWLNVAPSVPDGWRLGPRLLVSSASLLIPTLLMGGTLPALVRHFASSLSGVRYELARLYAV NSLGAAVGVFIAGTKLVPAIGLSSSAGLAAGLNILVALASLGLARRFPPALVPGQTPPAEAGDAEVSYPRIAVRAALIGV LLSGFTSMLYQVTWIRLLSIVLGASTYAFTLILTAFIMGIGLGSFWLMTRKGQVDSLRLFGRLQVALVASICVALPLYVR LPHLFRKAQWMMTRSLDTWPLFQVLTFGFCCLVLLVPTFFMGAAFPAAARVATAKVSEVGRQLGGVYLWNTVGTITGSAL GVLVLMPWWGMEGNFIAGVAANLLGAGLAFHAAPGRPAQHARALWPVAATAVLALVVLGGMSGWAVRLSGIASIRSHEKP PESYAKLVADTEAIIRPIFYQDDTFATVMVADVPVDNLRFMKLNGKVDASNGSDVETQVVAGHLGALLHPREPKSVLLVG AGAAITAGSVLVHPVEHLDMVEIAPAVIDAARLFKADNRNAVDDPRTHVHVDDAKTFMALSPRKYDLVVSVPSNPWVSGV SGLFTRDFFQTVDRHLADDGVLVQWIHTYESNEDLIKLVVRTLRDTFPHATTWLGPHDLVMVASRKPLAFDAARLAERMG HPEVRKDLSRVGINDVFALLSKQVHSEAGQLEFAGEGPINTDDHNLLEYASPIAFFVSNLDVRVKDERRAPEGADRLFLH DYVQQHPPTAEQAAGLYRNIERYHAPNDPMVRGAAAQWRRLAPDSPESALALGKAALAQQDLTLAASLLEPEVARGGRAP ALVTAYLRLVTAQTWASRTMWTPVGALHDTVALGREVASRHPDDEHLARALRSLCEALPRSSCEGTAQTPVAAPGGP
Specific function: Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor [H]
COG id: COG0421
COG function: function code E; Spermidine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the spermidine/spermine synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001045 [H]
Pfam domain/function: PF01564 Spermine_synth [H]
EC number: =2.5.1.16 [H]
Molecular weight: Translated: 102511; Mature: 102380
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: PS51006 SPERMIDINE_SYNTHASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPARFPKNLVACLLFLSGGTALVYELVWSKYLGNVLGNSGQAHAVVLATFMGGQALGA CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEEHHHCCHHHHH FVFGRTADRAKNPLALYGLLELGVGLYALVFPYVLDVLGALWLNVAPSVPDGWRLGPRLL HHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH VSSASLLIPTLLMGGTLPALVRHFASSLSGVRYELARLYAVNSLGAAVGVFIAGTKLVPA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC IGLSSSAGLAAGLNILVALASLGLARRFPPALVPGQTPPAEAGDAEVSYPRIAVRAALIG CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH VLLSGFTSMLYQVTWIRLLSIVLGASTYAFTLILTAFIMGIGLGSFWLMTRKGQVDSLRL HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHH FGRLQVALVASICVALPLYVRLPHLFRKAQWMMTRSLDTWPLFQVLTFGFCCLVLLVPTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH FMGAAFPAAARVATAKVSEVGRQLGGVYLWNTVGTITGSALGVLVLMPWWGMEGNFIAGV HHHHCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHEECCCCCCCCCHHHH AANLLGAGLAFHAAPGRPAQHARALWPVAATAVLALVVLGGMSGWAVRLSGIASIRSHEK HHHHHHCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC PPESYAKLVADTEAIIRPIFYQDDTFATVMVADVPVDNLRFMKLNGKVDASNGSDVETQV CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCEEECCCCCCCHHHH VAGHLGALLHPREPKSVLLVGAGAAITAGSVLVHPVEHLDMVEIAPAVIDAARLFKADNR HHHHHHHHCCCCCCCCEEEEECCCHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC NAVDDPRTHVHVDDAKTFMALSPRKYDLVVSVPSNPWVSGVSGLFTRDFFQTVDRHLADD CCCCCCCCEEEECCCHHHEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC GVLVQWIHTYESNEDLIKLVVRTLRDTFPHATTWLGPHDLVMVASRKPLAFDAARLAERM CCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHC GHPEVRKDLSRVGINDVFALLSKQVHSEAGQLEFAGEGPINTDDHNLLEYASPIAFFVSN CCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC LDVRVKDERRAPEGADRLFLHDYVQQHPPTAEQAAGLYRNIERYHAPNDPMVRGAAAQWR CCEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH RLAPDSPESALALGKAALAQQDLTLAASLLEPEVARGGRAPALVTAYLRLVTAQTWASRT HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHCCC MWTPVGALHDTVALGREVASRHPDDEHLARALRSLCEALPRSSCEGTAQTPVAAPGGP CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SSPARFPKNLVACLLFLSGGTALVYELVWSKYLGNVLGNSGQAHAVVLATFMGGQALGA CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEEHHHCCHHHHH FVFGRTADRAKNPLALYGLLELGVGLYALVFPYVLDVLGALWLNVAPSVPDGWRLGPRLL HHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH VSSASLLIPTLLMGGTLPALVRHFASSLSGVRYELARLYAVNSLGAAVGVFIAGTKLVPA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC IGLSSSAGLAAGLNILVALASLGLARRFPPALVPGQTPPAEAGDAEVSYPRIAVRAALIG CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH VLLSGFTSMLYQVTWIRLLSIVLGASTYAFTLILTAFIMGIGLGSFWLMTRKGQVDSLRL HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHH FGRLQVALVASICVALPLYVRLPHLFRKAQWMMTRSLDTWPLFQVLTFGFCCLVLLVPTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH FMGAAFPAAARVATAKVSEVGRQLGGVYLWNTVGTITGSALGVLVLMPWWGMEGNFIAGV HHHHCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHEECCCCCCCCCHHHH AANLLGAGLAFHAAPGRPAQHARALWPVAATAVLALVVLGGMSGWAVRLSGIASIRSHEK HHHHHHCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC PPESYAKLVADTEAIIRPIFYQDDTFATVMVADVPVDNLRFMKLNGKVDASNGSDVETQV CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCEEECCCCCCCHHHH VAGHLGALLHPREPKSVLLVGAGAAITAGSVLVHPVEHLDMVEIAPAVIDAARLFKADNR HHHHHHHHCCCCCCCCEEEEECCCHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC NAVDDPRTHVHVDDAKTFMALSPRKYDLVVSVPSNPWVSGVSGLFTRDFFQTVDRHLADD CCCCCCCCEEEECCCHHHEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC GVLVQWIHTYESNEDLIKLVVRTLRDTFPHATTWLGPHDLVMVASRKPLAFDAARLAERM CCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHC GHPEVRKDLSRVGINDVFALLSKQVHSEAGQLEFAGEGPINTDDHNLLEYASPIAFFVSN CCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC LDVRVKDERRAPEGADRLFLHDYVQQHPPTAEQAAGLYRNIERYHAPNDPMVRGAAAQWR CCEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH RLAPDSPESALALGKAALAQQDLTLAASLLEPEVARGGRAPALVTAYLRLVTAQTWASRT HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHCCC MWTPVGALHDTVALGREVASRHPDDEHLARALRSLCEALPRSSCEGTAQTPVAAPGGP CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]